Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KIM21_RS26390 Genome accession   NZ_CP074866
Coordinates   5125193..5125660 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 2013C_3653     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5120193..5130660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM21_RS26345 (KIM21_26035) rplP 5120303..5120713 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  KIM21_RS26350 (KIM21_26040) rpsC 5120726..5121427 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  KIM21_RS26355 (KIM21_26045) rplV 5121445..5121777 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  KIM21_RS26360 (KIM21_26050) rpsS 5121792..5122070 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  KIM21_RS26365 (KIM21_26055) rplB 5122087..5122908 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  KIM21_RS26370 (KIM21_26060) rplW 5122926..5123228 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  KIM21_RS26375 (KIM21_26065) rplD 5123225..5123830 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  KIM21_RS26380 (KIM21_26070) rplC 5123841..5124470 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  KIM21_RS26385 (KIM21_26075) rpsJ 5124503..5124814 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  KIM21_RS26390 (KIM21_26080) pilD 5125193..5125660 (+) 468 WP_000339836.1 prepilin peptidase Machinery gene
  KIM21_RS26395 (KIM21_26085) bfr 5125657..5126133 (-) 477 WP_000675515.1 bacterioferritin -
  KIM21_RS26400 (KIM21_26090) bfd 5126206..5126400 (-) 195 WP_032346861.1 bacterioferritin-associated ferredoxin -
  KIM21_RS26405 (KIM21_26095) tuf 5126583..5127767 (-) 1185 WP_000031783.1 elongation factor Tu -
  KIM21_RS26410 (KIM21_26100) fusA 5127838..5129952 (-) 2115 WP_000124700.1 elongation factor G -
  KIM21_RS26415 (KIM21_26105) rpsG 5130049..5130519 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=494203 KIM21_RS26390 WP_000339836.1 5125193..5125660(+) (pilD) [Escherichia coli strain 2013C_3653]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=494203 KIM21_RS26390 WP_000339836.1 5125193..5125660(+) (pilD) [Escherichia coli strain 2013C_3653]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361