Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   IM723_RS01070 Genome accession   NZ_CP063275
Coordinates   184332..185270 (+) Length   312 a.a.
NCBI ID   WP_011226817.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain DMST-H2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 179332..190270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM723_RS01050 - 180325..180543 (+) 219 Protein_152 ABC transporter permease subunit -
  IM723_RS01060 - 182320..183274 (+) 955 Protein_154 ABC transporter permease -
  IM723_RS01065 - 183288..184330 (+) 1043 Protein_155 ABC transporter ATP-binding protein -
  IM723_RS01070 amiF 184332..185270 (+) 939 WP_011226817.1 ATP-binding cassette domain-containing protein Regulator
  IM723_RS01075 - 185492..185746 (+) 255 WP_224103662.1 hypothetical protein -
  IM723_RS01080 hslO 185827..186693 (+) 867 WP_002949275.1 Hsp33 family molecular chaperone HslO -
  IM723_RS01085 dusB 186686..187663 (+) 978 WP_011680674.1 tRNA dihydrouridine synthase DusB -
  IM723_RS01090 - 187866..188729 (+) 864 WP_011226821.1 Rgg/GadR/MutR family transcriptional regulator -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35298.86 Da        Isoelectric Point: 6.0546

>NTDB_id=494141 IM723_RS01070 WP_011226817.1 184332..185270(+) (amiF) [Streptococcus thermophilus strain DMST-H2]
MTQERKKLVELKNVSLTFNKGKSNEVEAIDDVSFDIYEGEIFGLVGESGSGKTTIGRSVLKLSDIDSGTVTFSGNEISSL
KGKDLHDFRKTDQMIFQDPQSSLNGRMKIRDIIAEGIDIHKLAKSKEEREAKVKELIDLVGLNEDHLSRYPHEFSGGQRQ
RIGIARALAVNHHFIVADEPISALDVSIQAQVVNLMQKLQHEQGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEVGPADE
IYHNPIHPYTKSLLSAIPEPDPERERKRQHLIYDSSIENDGENRQMYEIRPGHFVYATEAEAKNYKEEAKSN

Nucleotide


Download         Length: 939 bp        

>NTDB_id=494141 IM723_RS01070 WP_011226817.1 184332..185270(+) (amiF) [Streptococcus thermophilus strain DMST-H2]
ATGACACAAGAACGTAAAAAGTTAGTAGAACTAAAAAATGTGTCTCTAACTTTTAATAAAGGAAAATCAAACGAGGTTGA
GGCTATTGATGACGTTAGCTTTGATATCTATGAGGGCGAAATTTTTGGACTAGTTGGAGAATCTGGATCAGGTAAAACAA
CCATTGGGCGATCTGTTTTAAAACTTTCTGATATTGATTCGGGTACTGTTACCTTTTCAGGTAATGAGATATCAAGTTTA
AAAGGGAAAGATCTTCATGATTTCCGTAAGACAGATCAGATGATCTTTCAAGATCCTCAATCTAGTCTTAATGGACGCAT
GAAAATCCGTGATATTATTGCTGAAGGCATTGATATTCATAAATTGGCTAAATCTAAGGAAGAGCGTGAAGCTAAGGTTA
AAGAACTCATTGATTTGGTAGGGTTAAATGAAGATCACCTATCAAGATATCCTCATGAGTTTTCTGGTGGTCAACGTCAA
AGAATTGGTATTGCGCGTGCTTTAGCGGTTAATCATCATTTTATTGTAGCAGACGAACCGATTTCTGCTTTGGATGTTTC
TATTCAAGCACAAGTGGTTAATTTGATGCAGAAGTTGCAACATGAACAGGGGTTAACTTATTTGTTTATTGCCCATGACC
TATCGATGGTTAAATATATATCCGATCGTATTGGTGTAATGCATTGGGGTAAACTTCTTGAAGTGGGACCAGCAGATGAG
ATCTATCATAACCCGATTCATCCTTATACAAAGAGTCTATTATCTGCAATTCCAGAACCAGATCCAGAAAGAGAGCGTAA
GCGTCAGCATTTGATTTACGATTCCTCTATTGAAAATGATGGGGAAAATAGACAAATGTATGAAATCCGACCAGGGCATT
TTGTTTATGCTACAGAAGCAGAGGCTAAAAATTATAAAGAAGAAGCCAAGTCTAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.443

97.756

0.522
  amiF Streptococcus thermophilus LMG 18311

53.115

97.756

0.519
  amiF Streptococcus salivarius strain HSISS4

52.787

97.756

0.516