Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IE977_RS08330 Genome accession   NZ_CP063224
Coordinates   1765998..1766624 (+) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei subsp. steigerwaltii strain BD-50-Eh     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1760998..1771624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IE977_RS08310 (IE977_08310) - 1761397..1763157 (-) 1761 WP_017384808.1 Lon protease family protein -
  IE977_RS08315 (IE977_08315) matP 1763344..1763796 (+) 453 WP_003858158.1 macrodomain Ter protein MatP -
  IE977_RS08320 (IE977_08320) ompA 1763862..1764914 (-) 1053 WP_017694761.1 porin OmpA -
  IE977_RS08325 (IE977_08325) sulA 1765271..1765780 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  IE977_RS08330 (IE977_08330) sxy/tfoX 1765998..1766624 (+) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  IE977_RS08335 (IE977_08335) yccS 1766581..1768743 (-) 2163 WP_047719338.1 YccS family putative transporter -
  IE977_RS08340 (IE977_08340) - 1768762..1769208 (-) 447 WP_003858149.1 YccF domain-containing protein -
  IE977_RS08345 (IE977_08345) helD 1769331..1771385 (+) 2055 WP_047719339.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=493928 IE977_RS08330 WP_017384804.1 1765998..1766624(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii strain BD-50-Eh]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=493928 IE977_RS08330 WP_017384804.1 1765998..1766624(+) (sxy/tfoX) [Enterobacter hormaechei subsp. steigerwaltii strain BD-50-Eh]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACACTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572