Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   INR79_RS17205 Genome accession   NZ_CP063199
Coordinates   3800273..3800983 (+) Length   236 a.a.
NCBI ID   WP_223095256.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43132     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3795273..3805983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INR79_RS17185 (INR79_17185) lexA 3795400..3796017 (-) 618 WP_004404532.1 transcriptional repressor LexA -
  INR79_RS17190 (INR79_17190) plsB 3796347..3798770 (+) 2424 WP_223095253.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  INR79_RS17195 (INR79_17195) - 3798827..3799291 (-) 465 WP_004404522.1 hypothetical protein -
  INR79_RS17200 (INR79_17200) bioH 3799432..3800196 (-) 765 WP_223095254.1 pimeloyl-ACP methyl ester esterase BioH -
  INR79_RS17205 (INR79_17205) comF 3800273..3800983 (+) 711 WP_223095256.1 ComF family protein Machinery gene
  INR79_RS17210 (INR79_17210) nfuA 3801074..3801661 (+) 588 WP_004404517.1 Fe-S biogenesis protein NfuA -
  INR79_RS17215 (INR79_17215) - 3801751..3803070 (-) 1320 WP_223095258.1 trypsin-like serine protease -
  INR79_RS17220 (INR79_17220) cysQ 3803371..3804189 (-) 819 WP_022551827.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  INR79_RS17225 (INR79_17225) nudE 3804201..3804755 (-) 555 WP_022596696.1 ADP compounds hydrolase NudE -
  INR79_RS17230 (INR79_17230) - 3804915..3805673 (-) 759 WP_004404510.1 type II secretion system protein N -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27298.83 Da        Isoelectric Point: 8.5423

>NTDB_id=493819 INR79_RS17205 WP_223095256.1 3800273..3800983(+) (comF) [Vibrio sp. SCSIO 43132]
MVISSWLKLKLHRYFNLQCPLCGLNIEEPTPETRWCRHCLNSMSDPCRCQCCGLPTLEPVEFCGECLSNPPPWRRLYCVN
DYRPPLSHYIHSLKFQHQFRLAPDLSYLLAQKIAEPADVITSVPLHWRRELIRGYNQSDHLARALCQHLNMPERFNPNLF
KRVKYTAPQLGQDKKARHRNLYGAFRLIAPPAAKRVAIVDDVVTTGSTIRQMCNLLLDVGVETIDIYCICRTPEPK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=493819 INR79_RS17205 WP_223095256.1 3800273..3800983(+) (comF) [Vibrio sp. SCSIO 43132]
ATGGTGATTTCCAGCTGGCTAAAGCTCAAATTACACCGTTATTTTAATCTGCAATGCCCGCTATGTGGTCTGAACATTGA
AGAGCCCACACCAGAAACACGATGGTGCAGACATTGCCTGAACAGCATGAGCGATCCTTGCCGTTGCCAATGCTGCGGGC
TACCGACTTTGGAACCTGTTGAATTCTGTGGTGAGTGCTTAAGCAACCCGCCTCCCTGGCGCCGTCTGTATTGTGTAAAC
GACTATCGTCCACCGCTTTCGCATTATATCCACAGCCTGAAATTTCAGCATCAGTTTCGTCTAGCCCCTGACCTCAGCTA
CTTACTTGCGCAGAAAATTGCAGAGCCTGCCGATGTGATTACTTCTGTCCCGCTTCACTGGCGCAGAGAACTGATACGCG
GCTACAACCAGAGTGACCATCTGGCAAGAGCATTGTGTCAGCATCTTAATATGCCCGAACGATTTAATCCGAATCTGTTC
AAGCGGGTGAAATATACTGCACCTCAACTCGGTCAGGATAAAAAGGCGAGGCATAGAAACCTTTATGGTGCTTTTCGGTT
AATTGCGCCTCCAGCTGCAAAGCGCGTAGCAATCGTCGACGATGTGGTGACAACGGGCAGCACTATCCGACAAATGTGTA
ATTTACTGCTTGATGTTGGCGTAGAAACCATCGATATTTACTGCATATGCCGAACCCCTGAGCCGAAATAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(180-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.766

99.576

0.525
  comF Vibrio campbellii strain DS40M4

48.133

100

0.492