Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KIM27_RS24845 Genome accession   NZ_CP074849
Coordinates   4908983..4909450 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 7_12_15B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4903983..4914450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM27_RS24800 (KIM27_24530) rplP 4904093..4904503 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  KIM27_RS24805 (KIM27_24535) rpsC 4904516..4905217 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  KIM27_RS24810 (KIM27_24540) rplV 4905235..4905567 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  KIM27_RS24815 (KIM27_24545) rpsS 4905582..4905860 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  KIM27_RS24820 (KIM27_24550) rplB 4905877..4906698 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  KIM27_RS24825 (KIM27_24555) rplW 4906716..4907018 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  KIM27_RS24830 (KIM27_24560) rplD 4907015..4907620 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  KIM27_RS24835 (KIM27_24565) rplC 4907631..4908260 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  KIM27_RS24840 (KIM27_24570) rpsJ 4908293..4908604 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  KIM27_RS24845 (KIM27_24575) pilD 4908983..4909450 (+) 468 WP_000339836.1 prepilin peptidase Machinery gene
  KIM27_RS24850 (KIM27_24580) bfr 4909447..4909923 (-) 477 WP_000675515.1 bacterioferritin -
  KIM27_RS24855 (KIM27_24585) bfd 4909996..4910190 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KIM27_RS24860 (KIM27_24590) tuf 4910373..4911557 (-) 1185 WP_000031783.1 elongation factor Tu -
  KIM27_RS24865 (KIM27_24595) fusA 4911628..4913742 (-) 2115 WP_000124700.1 elongation factor G -
  KIM27_RS24870 (KIM27_24600) rpsG 4913839..4914309 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=493728 KIM27_RS24845 WP_000339836.1 4908983..4909450(+) (pilD) [Escherichia coli strain 7_12_15B]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=493728 KIM27_RS24845 WP_000339836.1 4908983..4909450(+) (pilD) [Escherichia coli strain 7_12_15B]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361