Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IMY50_RS19025 Genome accession   NZ_CP063158
Coordinates   3775553..3776332 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain CF4-51     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3750254..3812016 3775553..3776332 within 0


Gene organization within MGE regions


Location: 3750254..3812016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY50_RS18915 (IMY50_18910) - 3750825..3751724 (-) 900 WP_000868221.1 polysaccharide deacetylase family protein -
  IMY50_RS18920 (IMY50_18915) pnp 3751877..3754015 (-) 2139 WP_000076745.1 polyribonucleotide nucleotidyltransferase -
  IMY50_RS18925 (IMY50_18920) rpsO 3754176..3754445 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  IMY50_RS18930 (IMY50_18925) ribF 3754546..3755517 (-) 972 WP_000766705.1 bifunctional riboflavin kinase/FAD synthetase -
  IMY50_RS18935 (IMY50_18930) truB 3755561..3756484 (-) 924 WP_000399362.1 tRNA pseudouridine(55) synthase TruB -
  IMY50_RS18940 (IMY50_18935) rbfA 3756571..3756927 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  IMY50_RS18945 (IMY50_18940) - 3756943..3757224 (-) 282 WP_000634350.1 DUF503 family protein -
  IMY50_RS18950 (IMY50_18945) infB 3757221..3759287 (-) 2067 WP_000036347.1 translation initiation factor IF-2 -
  IMY50_RS18955 (IMY50_18950) - 3759292..3759603 (-) 312 WP_001286522.1 YlxQ family RNA-binding protein -
  IMY50_RS18960 (IMY50_18955) - 3759604..3759876 (-) 273 WP_000071125.1 YlxR family protein -
  IMY50_RS18965 (IMY50_18960) nusA 3759888..3760994 (-) 1107 WP_000102598.1 transcription termination factor NusA -
  IMY50_RS18970 (IMY50_18965) rimP 3761012..3761482 (-) 471 WP_000359095.1 ribosome maturation factor RimP -
  IMY50_RS18975 (IMY50_18970) - 3761816..3766117 (-) 4302 WP_016512389.1 PolC-type DNA polymerase III -
  IMY50_RS18980 (IMY50_18975) - 3766242..3767942 (-) 1701 WP_000814317.1 proline--tRNA ligase -
  IMY50_RS18985 (IMY50_18980) rseP 3768052..3769308 (-) 1257 WP_071713501.1 RIP metalloprotease RseP -
  IMY50_RS18990 (IMY50_18985) dxr 3769326..3770468 (-) 1143 WP_000790380.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  IMY50_RS18995 (IMY50_18990) cdsA 3770492..3771283 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  IMY50_RS19000 (IMY50_18995) uppS 3771301..3772077 (-) 777 WP_000971296.1 isoprenyl transferase -
  IMY50_RS19005 (IMY50_19000) frr 3772163..3772720 (-) 558 WP_000531505.1 ribosome recycling factor -
  IMY50_RS19010 (IMY50_19005) pyrH 3772723..3773445 (-) 723 WP_000042669.1 UMP kinase -
  IMY50_RS19015 (IMY50_19010) tsf 3773512..3774399 (-) 888 WP_001018577.1 translation elongation factor Ts -
  IMY50_RS19020 (IMY50_19015) rpsB 3774503..3775204 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  IMY50_RS19025 (IMY50_19020) codY 3775553..3776332 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IMY50_RS19030 (IMY50_19025) hslU 3776410..3777801 (-) 1392 WP_000550085.1 ATP-dependent protease ATPase subunit HslU -
  IMY50_RS19035 (IMY50_19030) hslV 3777824..3778366 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  IMY50_RS19040 (IMY50_19035) xerC 3778409..3779308 (-) 900 WP_001101245.1 tyrosine recombinase XerC -
  IMY50_RS19045 (IMY50_19040) trmFO 3779374..3780678 (-) 1305 WP_000213006.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IMY50_RS19050 (IMY50_19045) topA 3780727..3782805 (-) 2079 WP_001286955.1 type I DNA topoisomerase -
  IMY50_RS19055 (IMY50_19050) dprA 3782950..3783819 (-) 870 WP_000818046.1 DNA-processing protein DprA -
  IMY50_RS19060 (IMY50_19055) sucD 3783908..3784810 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  IMY50_RS19065 (IMY50_19060) sucC 3784830..3785990 (-) 1161 WP_001020790.1 ADP-forming succinate--CoA ligase subunit beta -
  IMY50_RS19070 (IMY50_19065) - 3786184..3786957 (-) 774 WP_001194259.1 ribonuclease HII -
  IMY50_RS19075 (IMY50_19070) ylqF 3787014..3787904 (-) 891 WP_000236702.1 ribosome biogenesis GTPase YlqF -
  IMY50_RS19080 (IMY50_19075) lepB 3787925..3788476 (-) 552 WP_000711852.1 signal peptidase I -
  IMY50_RS19085 (IMY50_19080) rplS 3788578..3788922 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  IMY50_RS19090 (IMY50_19085) trmD 3789069..3789803 (-) 735 WP_000686899.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  IMY50_RS19095 (IMY50_19090) rimM 3789803..3790318 (-) 516 WP_000170272.1 ribosome maturation factor RimM -
  IMY50_RS19100 (IMY50_19095) - 3790439..3790666 (-) 228 WP_000737399.1 KH domain-containing protein -
  IMY50_RS19105 (IMY50_19100) rpsP 3790681..3790953 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  IMY50_RS19110 (IMY50_19105) ffh 3791055..3792404 (-) 1350 WP_000863460.1 signal recognition particle protein -
  IMY50_RS19115 (IMY50_19110) - 3792417..3792749 (-) 333 WP_000891062.1 putative DNA-binding protein -
  IMY50_RS19120 (IMY50_19115) ftsY 3792882..3793871 (-) 990 WP_000007642.1 signal recognition particle-docking protein FtsY -
  IMY50_RS19125 (IMY50_19120) smc 3793887..3797456 (-) 3570 WP_071713503.1 chromosome segregation protein SMC -
  IMY50_RS19130 (IMY50_19125) rncS 3797604..3798341 (-) 738 WP_001146875.1 ribonuclease III -
  IMY50_RS19135 (IMY50_19130) acpP 3798400..3798633 (-) 234 WP_000786062.1 acyl carrier protein -
  IMY50_RS19140 (IMY50_19135) fabG 3798703..3799443 (-) 741 WP_000911769.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  IMY50_RS19145 (IMY50_19140) fabD 3799443..3800387 (-) 945 WP_000515902.1 ACP S-malonyltransferase -
  IMY50_RS19150 (IMY50_19145) plsX 3800402..3801394 (-) 993 WP_000684097.1 phosphate acyltransferase PlsX -
  IMY50_RS19155 (IMY50_19150) fapR 3801391..3801984 (-) 594 WP_000747349.1 transcription factor FapR -
  IMY50_RS19160 (IMY50_19155) recG 3802073..3804121 (-) 2049 WP_071713504.1 ATP-dependent DNA helicase RecG -
  IMY50_RS19165 (IMY50_19160) - 3804412..3806088 (-) 1677 WP_000027131.1 DAK2 domain-containing protein -
  IMY50_RS19170 (IMY50_19165) - 3806111..3806473 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  IMY50_RS19175 (IMY50_19170) rpmB 3806850..3807038 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  IMY50_RS19180 (IMY50_19175) spoVM 3807112..3807192 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  IMY50_RS19185 (IMY50_19180) - 3807259..3807939 (-) 681 WP_071713505.1 thiamine diphosphokinase -
  IMY50_RS19190 (IMY50_19185) rpe 3808009..3808653 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  IMY50_RS19195 (IMY50_19190) rsgA 3808656..3809537 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  IMY50_RS19200 (IMY50_19195) pknB 3809784..3811757 (-) 1974 WP_000904744.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=493640 IMY50_RS19025 WP_000421290.1 3775553..3776332(-) (codY) [Bacillus cereus strain CF4-51]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=493640 IMY50_RS19025 WP_000421290.1 3775553..3776332(-) (codY) [Bacillus cereus strain CF4-51]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGTGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGACGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGCATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGATAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459