Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IMY14_RS08740 Genome accession   NZ_CP063150
Coordinates   1685204..1685983 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain s-16     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1680204..1690983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY14_RS08720 trmFO 1680897..1682204 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IMY14_RS08725 xerC 1682272..1683186 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  IMY14_RS08730 clpQ 1683199..1683744 (+) 546 WP_174616637.1 ATP-dependent protease subunit ClpQ -
  IMY14_RS08735 hslU 1683752..1685164 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  IMY14_RS08740 codY 1685204..1685983 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IMY14_RS08745 flgB 1686363..1686752 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  IMY14_RS08750 flgC 1686752..1687204 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  IMY14_RS08755 fliE 1687215..1687535 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  IMY14_RS08760 fliF 1687581..1689191 (+) 1611 WP_015483223.1 flagellar basal-body MS-ring/collar protein FliF -
  IMY14_RS08765 fliG 1689204..1690220 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  IMY14_RS08770 fliH 1690213..1690965 (+) 753 WP_024572494.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=493391 IMY14_RS08740 WP_003220850.1 1685204..1685983(+) (codY) [Bacillus subtilis strain s-16]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=493391 IMY14_RS08740 WP_003220850.1 1685204..1685983(+) (codY) [Bacillus subtilis strain s-16]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTCATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAACTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATCGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTGCTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467