Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INP93_RS00270 Genome accession   NZ_CP063121
Coordinates   55178..55855 (+) Length   225 a.a.
NCBI ID   WP_197544815.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C130_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50178..60855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP93_RS00245 (INP93_00245) rppH 50337..50930 (-) 594 WP_049379955.1 RNA pyrophosphohydrolase -
  INP93_RS00250 (INP93_00250) ampD 51414..51977 (-) 564 WP_197544811.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  INP93_RS00255 (INP93_00255) pilA 52120..52563 (+) 444 WP_197544812.1 prepilin peptidase-dependent pilin Machinery gene
  INP93_RS00260 (INP93_00260) pilB 52570..53949 (+) 1380 WP_197544813.1 GspE/PulE family protein Machinery gene
  INP93_RS00265 (INP93_00265) pilC 53958..55181 (+) 1224 WP_197544814.1 type II secretion system F family protein Machinery gene
  INP93_RS00270 (INP93_00270) pilD 55178..55855 (+) 678 WP_197544815.1 prepilin peptidase Machinery gene
  INP93_RS00275 (INP93_00275) coaE 55944..56564 (+) 621 WP_197544816.1 dephospho-CoA kinase -
  INP93_RS00280 (INP93_00280) yacG 56557..56763 (+) 207 WP_197544817.1 DNA gyrase inhibitor YacG -
  INP93_RS00285 (INP93_00285) - 56760..57041 (+) 282 WP_197544818.1 GNAT family N-acetyltransferase -
  INP93_RS00290 (INP93_00290) rhlB 57132..58394 (+) 1263 WP_197544819.1 ATP-dependent RNA helicase RhlB -
  INP93_RS00295 (INP93_00295) mreD 58436..58924 (-) 489 WP_193451403.1 rod shape-determining protein MreD -
  INP93_RS00300 (INP93_00300) mreC 58924..59988 (-) 1065 WP_197544820.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 26009.91 Da        Isoelectric Point: 5.0727

>NTDB_id=493096 INP93_RS00270 WP_197544815.1 55178..55855(+) (pilD) [Haemophilus parainfluenzae strain M1C130_2]
MMTLAFFLLGGLAGILAWVYIDRFIPNLQQEIYQNYIELYPENNPIFYSEKAVIQSQKCGHIFLYFLGFGLCFAVLCYFL
QDELFTLWLAITLSLIFVISWLDWHYQLISPTPCLFLFFLGLFGAHQEFSILTLSQSLESAVSFFSIFYIIYHLSKWFYK
KEALGRGDYWLALGIGAYLTIELLPLFLFIACLLGIIGYWISRQPVLPFAPFLCLSLIITSAINL

Nucleotide


Download         Length: 678 bp        

>NTDB_id=493096 INP93_RS00270 WP_197544815.1 55178..55855(+) (pilD) [Haemophilus parainfluenzae strain M1C130_2]
ATGATGACATTAGCTTTTTTTTTATTGGGTGGTTTAGCGGGCATCCTTGCTTGGGTTTATATTGATCGTTTTATACCCAA
TCTCCAACAAGAAATTTATCAGAACTATATCGAACTTTATCCTGAAAACAATCCTATTTTCTATAGCGAAAAAGCAGTGA
TTCAATCTCAAAAGTGCGGTCATATTTTCCTTTATTTTTTAGGGTTTGGACTCTGTTTTGCTGTACTCTGTTATTTTCTT
CAGGATGAATTATTTACTTTATGGCTCGCGATTACGCTTAGTCTCATCTTTGTTATCAGTTGGCTAGACTGGCATTATCA
GCTGATTTCACCTACACCTTGCCTGTTTTTATTTTTCCTGGGTTTATTCGGCGCACATCAAGAATTTTCAATTCTGACGC
TTTCTCAAAGTTTAGAAAGTGCGGTTAGTTTTTTCAGTATTTTTTACATCATCTATCATTTGTCTAAATGGTTTTATAAG
AAGGAAGCGTTAGGCCGTGGCGATTATTGGCTCGCTTTAGGAATCGGCGCTTATCTCACCATCGAGCTCTTACCACTTTT
TTTATTCATTGCCTGTCTATTAGGCATCATAGGTTATTGGATTTCTCGTCAACCTGTTTTACCTTTCGCGCCCTTTCTTT
GCTTATCGTTAATCATCACCAGTGCAATCAACCTATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae Rd KW20

52.036

98.222

0.511
  pilD Haemophilus influenzae 86-028NP

51.584

98.222

0.507