Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KIM36_RS27050 Genome accession   NZ_CP074811
Coordinates   5224053..5224520 (+) Length   155 a.a.
NCBI ID   WP_000339836.1    Uniprot ID   -
Organism   Escherichia coli strain 7_56_38A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5219053..5229520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM36_RS27005 (KIM36_26640) rplP 5219163..5219573 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  KIM36_RS27010 (KIM36_26645) rpsC 5219586..5220287 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  KIM36_RS27015 (KIM36_26650) rplV 5220305..5220637 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  KIM36_RS27020 (KIM36_26655) rpsS 5220652..5220930 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  KIM36_RS27025 (KIM36_26660) rplB 5220947..5221768 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  KIM36_RS27030 (KIM36_26665) rplW 5221786..5222088 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  KIM36_RS27035 (KIM36_26670) rplD 5222085..5222690 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  KIM36_RS27040 (KIM36_26675) rplC 5222701..5223330 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  KIM36_RS27045 (KIM36_26680) rpsJ 5223363..5223674 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  KIM36_RS27050 (KIM36_26685) pilD 5224053..5224520 (+) 468 WP_000339836.1 prepilin peptidase Machinery gene
  KIM36_RS27055 (KIM36_26690) bfr 5224517..5224993 (-) 477 WP_000675515.1 bacterioferritin -
  KIM36_RS27060 (KIM36_26695) bfd 5225066..5225260 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KIM36_RS27065 (KIM36_26700) tuf 5225443..5226627 (-) 1185 WP_000031783.1 elongation factor Tu -
  KIM36_RS27070 (KIM36_26705) fusA 5226698..5228812 (-) 2115 WP_000124700.1 elongation factor G -
  KIM36_RS27075 (KIM36_26710) rpsG 5228909..5229379 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16951.08 Da        Isoelectric Point: 8.1296

>NTDB_id=493011 KIM36_RS27050 WP_000339836.1 5224053..5224520(+) (pilD) [Escherichia coli strain 7_56_38A]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=493011 KIM36_RS27050 WP_000339836.1 5224053..5224520(+) (pilD) [Escherichia coli strain 7_56_38A]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361