Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   A0083_RS05040 Genome accession   NZ_CP063089
Coordinates   1001822..1002550 (-) Length   242 a.a.
NCBI ID   WP_197552565.1    Uniprot ID   -
Organism   Campylobacter sp. 2014D-0216     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 996822..1007550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0083_RS05000 (A0083_05000) - 997495..998460 (+) 966 WP_120759233.1 DNA polymerase III subunit delta -
  A0083_RS05005 (A0083_05005) rpsF 998551..998925 (+) 375 WP_120759235.1 30S ribosomal protein S6 -
  A0083_RS05010 (A0083_05010) - 998929..999456 (+) 528 WP_120759237.1 single-stranded DNA-binding protein -
  A0083_RS05015 (A0083_05015) rpsR 999468..999728 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  A0083_RS05020 (A0083_05020) - 999775..1000416 (+) 642 WP_120759239.1 MarC family protein -
  A0083_RS05025 (A0083_05025) - 1000398..1000820 (-) 423 WP_120759241.1 hypothetical protein -
  A0083_RS05030 (A0083_05030) - 1000817..1001545 (-) 729 WP_120759243.1 type II secretion system protein -
  A0083_RS05035 (A0083_05035) - 1001529..1001825 (-) 297 WP_197552563.1 hypothetical protein -
  A0083_RS05040 (A0083_05040) proC 1001822..1002550 (-) 729 WP_197552565.1 pyrroline-5-carboxylate reductase Machinery gene
  A0083_RS05045 (A0083_05045) fliW 1002550..1002945 (-) 396 WP_120759248.1 flagellar assembly protein FliW -
  A0083_RS05050 (A0083_05050) bamD 1003124..1003780 (+) 657 WP_197552567.1 outer membrane protein assembly factor BamD -
  A0083_RS05055 (A0083_05055) lon 1003780..1006155 (+) 2376 WP_197552569.1 endopeptidase La -
  A0083_RS05060 (A0083_05060) - 1006172..1007545 (-) 1374 WP_197552571.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26287.54 Da        Isoelectric Point: 7.7314

>NTDB_id=492842 A0083_RS05040 WP_197552565.1 1001822..1002550(-) (proC) [Campylobacter sp. 2014D-0216]
MSEIYILGNGAMASAIVKGISDAYEVIIVARDLKKASSLNFKVISYDEFDMENKNVILAFKPYALESVATQLKGKARWLV
SVLAKTTFEQLSSIKAQNYIKVMPNTAAEFKASTTAYLMKNDLFKDEVLALLGTFGKAIALQNEKEFDTAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYELTRACFESFSALFNHSHPVIVKEKICSPAGVTIKGVEALEKKALRGAFFEAFEASL
GQ

Nucleotide


Download         Length: 729 bp        

>NTDB_id=492842 A0083_RS05040 WP_197552565.1 1001822..1002550(-) (proC) [Campylobacter sp. 2014D-0216]
ATGTCCGAAATTTATATTTTAGGAAATGGCGCTATGGCTAGTGCTATAGTAAAAGGTATAAGCGATGCTTATGAAGTGAT
AATAGTTGCAAGAGATTTAAAAAAGGCAAGTAGTTTAAATTTTAAAGTCATATCATATGATGAGTTTGATATGGAAAATA
AAAATGTTATTTTGGCTTTTAAACCTTATGCTTTAGAATCAGTAGCTACTCAATTAAAAGGCAAAGCAAGGTGGCTTGTT
TCGGTTTTAGCAAAGACTACTTTTGAGCAACTTAGTAGTATTAAAGCGCAAAATTATATTAAAGTCATGCCAAATACCGC
AGCAGAATTTAAGGCATCTACAACTGCGTATTTGATGAAAAATGATTTGTTTAAAGATGAGGTTTTGGCGTTATTGGGTA
CTTTTGGAAAAGCTATAGCATTGCAAAATGAAAAAGAATTTGACACAGCAATGGTTTTAAGTGGATGTGCTCCAGCTTTT
TTAGCTTTAGTGGCAGAAAGTCTAGCTAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGCTTACGCG
TGCTTGTTTTGAAAGTTTCAGTGCTTTGTTTAACCACTCTCATCCAGTAATTGTAAAAGAAAAAATTTGCTCTCCTGCAG
GAGTTACAATTAAAGGAGTTGAAGCTTTGGAAAAAAAAGCTTTGCGTGGAGCTTTTTTTGAAGCTTTTGAAGCAAGTTTA
GGTCAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-239)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.159

98.76

0.574