Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IL989_RS12455 Genome accession   NZ_CP062984
Coordinates   2544531..2546888 (-) Length   785 a.a.
NCBI ID   WP_193350491.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2539531..2551888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS12435 (IL989_12435) - 2539615..2541168 (+) 1554 WP_193350489.1 SH3 domain-containing protein -
  IL989_RS12440 (IL989_12440) dtd 2541195..2541638 (-) 444 WP_013353029.1 D-aminoacyl-tRNA deacylase -
  IL989_RS12445 (IL989_12445) relA 2541651..2543855 (-) 2205 WP_193350490.1 GTP diphosphokinase -
  IL989_RS12450 (IL989_12450) - 2544013..2544525 (-) 513 WP_013353031.1 adenine phosphoribosyltransferase -
  IL989_RS12455 (IL989_12455) recJ 2544531..2546888 (-) 2358 WP_193350491.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IL989_RS12460 (IL989_12460) - 2546944..2547270 (-) 327 WP_193350492.1 lipopolysaccharide assembly LapA domain-containing protein -
  IL989_RS12465 (IL989_12465) - 2547334..2547831 (-) 498 WP_193350493.1 cation:proton antiporter regulatory subunit -
  IL989_RS12470 (IL989_12470) secDF 2547962..2550181 (-) 2220 WP_193350494.1 protein translocase subunit SecDF -
  IL989_RS12475 (IL989_12475) - 2550218..2550514 (-) 297 WP_013353036.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87309.75 Da        Isoelectric Point: 4.9886

>NTDB_id=492265 IL989_RS12455 WP_193350491.1 2544531..2546888(-) (recJ) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MLASKMRWEIQQPDKEKVKSLTEQLDITPLVASLLVKRGFDTAESARLFLHTKDADFYDPYDLKGMREAVDRIKLAVSRG
EPIMIYGDYDADGVTSTSVMLTALRQLSANVDFYIPDRFTEGYGPNEQAFRSIKERGFSLIITVDTGIAAVHEAEVAKEL
GLDVIITDHHEPGPELPDVFAIIHPKQPGCSYPFKELAGVGVAFKLAHALTGSLPEAMLDLAAIGTVADLVPLHDENRLI
ASLGIERLRTTNRPGLKALIKLSGGDIGQADEETIGFQVAPRLNAVGRIEQADPAVHLLMTDDQFEAEELASDIDRLNKE
RQKMVKTMTEEAVEMVQQQGGNPSAIVVAKAGWNPGVVGIVASKLAERFYRPAVVLGIDEEQGIAKGSARSIRGFNLFTS
LSQCRDILPHFGGHPMAAGMTLKAEDVADLRDRLNQMAEETLTEEDFIPVQEVDLVCGVEDITVESITELNMLSPFGMLN
PKPHVMVENAVLDEVRLIGANKNHVKMTVKNDSAVLDCVGFNKGELEAGIVPGSTISIVGEMSINEWNNRKKPQLMIKDA
AVQEWQLFDIRGKRMWEDTVTALPKEKRVLISFNEKAAQKLRAELSGELAEITSESEAEALPLDGKYAVFLDVPPSADRL
QRLLDGKKPERIYFVFINHEEHFLSSFPSRNDFKWFYAFLLKRGTFNLGRHGSELARHRGWSIDTINFMTKVFFDLGFVK
IEDGVLSVVSGAKKRDLADSQTYQVKQQLMELDQKLNYSAAHELKEWLNKLMNQGSEAYESTRRT

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=492265 IL989_RS12455 WP_193350491.1 2544531..2546888(-) (recJ) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGTTAGCGTCAAAAATGCGCTGGGAAATCCAGCAGCCGGATAAGGAAAAGGTCAAATCACTCACAGAACAATTGGACAT
AACACCTCTTGTAGCATCGCTGCTTGTAAAAAGAGGTTTTGATACTGCCGAAAGTGCAAGGCTGTTTTTACATACAAAGG
ATGCAGACTTTTATGACCCGTATGATTTAAAGGGAATGCGGGAAGCAGTTGATCGGATAAAGCTGGCGGTTTCCCGCGGG
GAACCGATTATGATTTACGGAGATTACGATGCAGACGGCGTTACAAGCACGTCAGTGATGCTGACGGCGCTCAGACAGCT
GTCAGCGAACGTTGACTTTTATATTCCCGACCGTTTCACAGAAGGCTACGGCCCGAATGAACAAGCTTTCCGCTCCATAA
AAGAGCGGGGATTTTCGCTTATCATTACAGTGGATACGGGTATCGCCGCCGTTCATGAAGCTGAAGTCGCAAAAGAGCTC
GGTTTGGACGTCATTATTACCGACCACCATGAGCCGGGACCCGAGCTTCCTGATGTATTTGCGATTATCCACCCGAAGCA
GCCGGGCTGCAGCTATCCGTTTAAAGAATTGGCCGGCGTCGGTGTGGCGTTTAAGCTTGCCCACGCGCTTACGGGTTCTT
TGCCGGAAGCTATGCTGGACCTGGCGGCGATCGGTACGGTTGCTGATCTGGTGCCGCTGCATGATGAAAACAGATTAATA
GCGTCGCTTGGGATCGAAAGGCTTCGGACGACAAATCGGCCGGGTCTCAAAGCTCTGATTAAGCTTTCCGGCGGAGATAT
CGGACAAGCTGATGAGGAAACGATCGGGTTTCAGGTCGCACCGAGGCTGAATGCCGTCGGAAGAATAGAGCAGGCTGATC
CCGCCGTGCACCTGTTGATGACCGATGACCAGTTTGAAGCGGAGGAGCTGGCTTCGGATATTGACCGGCTGAATAAAGAG
CGGCAGAAAATGGTGAAAACGATGACCGAAGAGGCTGTTGAAATGGTTCAGCAGCAAGGCGGAAACCCTTCTGCCATTGT
CGTGGCAAAAGCCGGCTGGAATCCGGGAGTTGTCGGTATCGTCGCATCAAAGCTGGCTGAACGCTTTTACCGGCCCGCTG
TCGTGCTGGGGATTGATGAGGAGCAGGGAATCGCCAAAGGGTCGGCGCGAAGCATCAGAGGCTTCAACCTTTTTACGAGC
CTATCACAGTGCAGAGACATTCTTCCTCATTTCGGCGGACATCCGATGGCCGCAGGAATGACTTTGAAGGCTGAAGATGT
GGCGGATTTAAGGGACCGGCTGAATCAAATGGCTGAAGAAACCCTTACCGAAGAGGATTTTATCCCCGTTCAGGAGGTTG
ATCTTGTCTGCGGCGTCGAAGACATAACCGTTGAAAGCATTACAGAATTGAATATGCTGTCGCCGTTCGGCATGCTTAAC
CCTAAACCTCATGTGATGGTGGAAAACGCCGTGCTTGATGAAGTGCGCCTGATCGGAGCAAATAAAAATCACGTGAAAAT
GACGGTGAAAAATGATTCCGCCGTTCTCGACTGCGTCGGCTTTAACAAAGGAGAGCTTGAAGCCGGGATTGTTCCTGGAT
CAACGATTTCCATTGTCGGCGAGATGTCTATTAATGAATGGAACAACAGAAAGAAACCCCAGCTGATGATTAAAGATGCT
GCGGTGCAGGAATGGCAGCTTTTTGATATCAGGGGCAAGCGGATGTGGGAGGACACGGTCACTGCGCTGCCTAAGGAAAA
ACGGGTGCTCATCAGCTTTAACGAAAAAGCCGCCCAAAAGCTCCGTGCCGAGCTTTCGGGTGAGCTGGCTGAGATCACGT
CGGAATCCGAAGCAGAAGCTCTTCCGCTTGACGGAAAGTATGCCGTTTTTCTGGATGTGCCGCCATCAGCGGACCGCCTC
CAGCGTTTGCTTGACGGGAAGAAGCCGGAACGGATTTATTTTGTTTTTATTAATCATGAAGAACATTTCCTGTCCTCATT
TCCATCGCGGAATGACTTCAAGTGGTTTTACGCATTTCTCTTGAAAAGGGGCACTTTTAACTTAGGCAGGCATGGTTCAG
AGCTTGCAAGACACAGAGGATGGTCAATTGACACAATCAATTTCATGACAAAGGTGTTTTTTGATCTCGGTTTTGTTAAA
ATAGAAGATGGTGTGCTGTCTGTCGTGAGCGGCGCGAAAAAACGCGACCTCGCAGATTCGCAAACCTATCAGGTAAAACA
GCAGCTGATGGAATTAGACCAGAAGCTCAATTATTCCGCAGCCCATGAGCTGAAGGAATGGCTGAATAAGCTGATGAACC
AAGGTTCAGAGGCTTATGAAAGTACGAGGAGGACATAG

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-437)

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-768)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

81.679

100

0.818