Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   IL989_RS07900 Genome accession   NZ_CP062984
Coordinates   1591974..1592753 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1586974..1597753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS07880 (IL989_07880) trmFO 1587661..1588968 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  IL989_RS07885 (IL989_07885) xerC 1589038..1589955 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  IL989_RS07890 (IL989_07890) hslV 1589971..1590516 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  IL989_RS07895 (IL989_07895) hslU 1590533..1591936 (+) 1404 WP_013352251.1 HslU--HslV peptidase ATPase subunit -
  IL989_RS07900 (IL989_07900) codY 1591974..1592753 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  IL989_RS07905 (IL989_07905) flgB 1593107..1593496 (+) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  IL989_RS07910 (IL989_07910) flgC 1593496..1593948 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  IL989_RS07915 (IL989_07915) fliE 1593959..1594279 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  IL989_RS07920 (IL989_07920) fliF 1594322..1595932 (+) 1611 WP_193351785.1 flagellar basal-body MS-ring/collar protein FliF -
  IL989_RS07925 (IL989_07925) fliG 1595945..1596961 (+) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  IL989_RS07930 (IL989_07930) fliH 1596954..1597709 (+) 756 WP_193351786.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=492245 IL989_RS07900 WP_013352252.1 1591974..1592753(+) (codY) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=492245 IL989_RS07900 WP_013352252.1 1591974..1592753(+) (codY) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTTCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAGTTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467