Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   IMZ31_RS13310 Genome accession   NZ_CP062974
Coordinates   2605689..2608025 (-) Length   778 a.a.
NCBI ID   WP_371825453.1    Uniprot ID   -
Organism   Pontibacillus sp. ALD_SL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2600689..2613025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ31_RS13295 (IMZ31_13300) - 2603565..2604635 (-) 1071 WP_242705721.1 AI-2E family transporter -
  IMZ31_RS13300 (IMZ31_13305) - 2605176..2605331 (-) 156 WP_188651370.1 DUF3918 family protein -
  IMZ31_RS13305 (IMZ31_13310) - 2605356..2605544 (-) 189 WP_036785611.1 hypothetical protein -
  IMZ31_RS13310 (IMZ31_13315) recD2 2605689..2608025 (-) 2337 WP_371825453.1 ATP-dependent RecD-like DNA helicase Machinery gene
  IMZ31_RS13315 (IMZ31_13320) - 2608041..2608712 (-) 672 WP_207527809.1 lipopolysaccharide assembly protein LapB -
  IMZ31_RS13320 (IMZ31_13325) mnmA 2608984..2610096 (-) 1113 WP_207527810.1 tRNA 2-thiouridine(34) synthase MnmA -
  IMZ31_RS13325 (IMZ31_13330) - 2610110..2611255 (-) 1146 WP_207527811.1 cysteine desulfurase family protein -
  IMZ31_RS13330 (IMZ31_13335) cymR 2611277..2611696 (-) 420 WP_188651362.1 cysteine metabolism transcriptional regulator CymR -
  IMZ31_RS13335 (IMZ31_13340) - 2611629..2612372 (-) 744 WP_052115102.1 YitT family protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 88304.28 Da        Isoelectric Point: 4.8982

>NTDB_id=492147 IMZ31_RS13310 WP_371825453.1 2605689..2608025(-) (recD2) [Pontibacillus sp. ALD_SL1]
MAMEKQLEENFEPEKGFIKGEPLRMIYHNDEEHFSIALVKIIETNESFDENEIVLKGHFSPLDEGEHYTFYGRVTNHPKF
GEQYQVDHYQKEVPTSKEGIVGYLSSDLFYGIGKRTAENIVAILGEQTISRILQDPSVLKDVPGLKQDKADRLVADLKQH
QGFEHIVIGLSEYGFGLQMAQKIYETYQDQALEILQEDPYQFVFDIQGFGFKRADEVASHNNIAFDHPTRIQAACMYALN
QGSSHGHVYMTFGALQDEVLSILQGSSGVITNEIISREIAQLVEDEKVLVEQEKVYLPSLFFAEAGFAKQLHRVMLSELE
EEFTQAELMKVVGEIEDEESISYGKEQYDAIEKALHSKMMILTGGPGTGKTTVIKGIVNAYAKLKRKSLKPADYGKDEPF
PFLLTAPTGRAAKRMNESTGLPAVTIHRLLGWTGGESFDKDQNNQLSGKILIIDEFSMVDIWLANQLFRAIPSDMQVLLV
GDEDQLPSVGPGQVLSDLLSTDYIPATQLQEVYRQKEGSQIIRLAHDMKKGKCDEESLSKSHDFSFITCHEPQVLPVIQQ
VYQKAMARGHTLKDIQILAPMYRTKNGIHQLNQEIQALANPYSRQRREIKMKDDLIYRSGDKVIQLVNQPESGVYNGDIG
EIVAIYKADETKEQKEKLVVSFEGKEVEYLRKDLNQLMHAYCTSIHKSQGSEFPIVILPVVRGYSRMLKRNLLYTAVTRS
KQSLIICGDQEAFKRGVDTVDTNRRFTDLPDKIKIYMEAEVKDEEDLDEEELSPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=492147 IMZ31_RS13310 WP_371825453.1 2605689..2608025(-) (recD2) [Pontibacillus sp. ALD_SL1]
ATGGCAATGGAGAAGCAATTAGAAGAGAATTTCGAACCGGAGAAAGGCTTCATCAAAGGGGAACCACTGCGGATGATTTA
CCATAATGATGAAGAACACTTTTCCATTGCACTGGTTAAAATCATCGAGACAAATGAATCCTTTGATGAAAATGAAATTG
TATTAAAAGGACACTTTTCACCATTAGACGAAGGAGAGCACTACACGTTTTATGGGCGTGTGACCAATCATCCGAAATTT
GGCGAGCAGTATCAAGTTGATCATTATCAAAAGGAAGTTCCAACTTCTAAAGAGGGCATAGTGGGGTACCTCTCAAGCGA
TTTGTTCTATGGAATAGGAAAAAGAACCGCTGAGAACATCGTGGCTATACTAGGAGAACAAACCATTAGCCGGATTCTGC
AAGATCCTTCTGTATTGAAGGATGTACCTGGGCTGAAACAAGATAAAGCTGACAGGCTGGTTGCTGACTTGAAGCAGCAT
CAGGGTTTTGAACATATCGTCATTGGATTATCCGAATATGGCTTTGGCTTACAAATGGCTCAGAAAATATATGAAACGTA
CCAAGACCAAGCGCTTGAAATCTTACAAGAAGATCCTTATCAATTTGTATTTGATATTCAGGGGTTTGGTTTTAAACGGG
CCGACGAGGTCGCTTCTCACAACAATATTGCATTTGATCATCCTACAAGAATTCAAGCAGCTTGTATGTATGCTTTAAAT
CAAGGGAGCAGTCATGGACATGTCTATATGACCTTTGGAGCTTTGCAAGATGAAGTATTAAGCATTCTACAAGGATCATC
TGGTGTTATTACAAATGAGATTATTTCCCGAGAAATAGCGCAGCTTGTCGAAGATGAGAAGGTGCTGGTGGAGCAAGAGA
AGGTTTATTTACCATCGCTTTTCTTTGCGGAAGCCGGGTTTGCTAAGCAGCTTCACAGAGTCATGCTCTCTGAACTTGAA
GAAGAATTTACACAGGCAGAGTTAATGAAAGTGGTTGGAGAAATTGAAGATGAGGAAAGCATTAGTTACGGGAAAGAGCA
GTACGATGCTATTGAAAAAGCCCTTCATTCTAAAATGATGATCCTAACAGGTGGACCAGGAACAGGGAAGACCACTGTCA
TTAAAGGAATTGTAAATGCTTATGCTAAATTGAAGCGGAAGTCTTTAAAGCCTGCTGATTATGGCAAAGATGAACCTTTC
CCATTCCTTCTGACTGCCCCGACGGGAAGAGCTGCTAAACGTATGAATGAGTCAACAGGCTTACCAGCTGTAACGATACA
CCGTTTGCTTGGGTGGACAGGTGGAGAGTCTTTTGATAAAGATCAGAACAACCAGCTGAGTGGGAAAATCTTAATTATAG
ACGAATTTTCTATGGTTGATATATGGCTTGCGAACCAACTATTCCGGGCGATCCCTTCTGATATGCAGGTATTATTGGTT
GGGGATGAAGATCAATTGCCATCTGTCGGTCCAGGACAAGTGCTGTCTGACTTGTTGTCGACTGATTACATACCGGCCAC
ACAACTTCAAGAAGTGTACCGTCAAAAAGAAGGCTCGCAAATTATACGATTGGCACACGACATGAAAAAAGGAAAGTGTG
ACGAAGAGTCGTTATCCAAGTCCCATGACTTTTCTTTTATCACTTGTCATGAGCCGCAAGTGCTACCTGTCATTCAGCAA
GTTTATCAAAAGGCAATGGCAAGAGGTCACACGTTAAAGGATATTCAAATCCTTGCACCCATGTATCGAACAAAAAATGG
TATCCATCAGCTGAATCAGGAGATACAAGCATTAGCTAACCCTTATTCTAGACAGCGCAGGGAAATTAAAATGAAAGATG
ATCTGATCTATCGCTCCGGTGATAAAGTCATCCAGCTTGTGAACCAACCTGAGTCTGGGGTATATAATGGGGACATTGGT
GAGATTGTGGCGATTTACAAAGCCGATGAAACGAAAGAACAAAAAGAAAAACTTGTTGTTTCATTTGAAGGGAAAGAAGT
GGAATATCTACGTAAAGATCTCAATCAACTTATGCATGCGTATTGTACCTCTATCCATAAGTCACAAGGGAGCGAGTTCC
CAATCGTTATTTTACCTGTAGTGAGAGGTTATAGCCGTATGCTTAAGCGAAATCTTTTATACACTGCTGTGACAAGAAGT
AAACAATCGCTTATCATTTGCGGCGACCAGGAAGCTTTTAAGCGAGGAGTTGATACGGTGGACACGAATCGCCGTTTCAC
GGATTTACCTGATAAAATTAAAATTTACATGGAAGCGGAAGTAAAAGATGAAGAAGATCTGGATGAGGAAGAACTTTCCC
CTTATGACTTCATGTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-662)

AAA domain (AAA_30)

(343-551)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.553

100

0.499