Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BL1660_RS09220 Genome accession   NZ_CP062952
Coordinates   2125928..2127799 (+) Length   623 a.a.
NCBI ID   WP_007054106.1    Uniprot ID   A0A4R0SE98
Organism   Bifidobacterium longum subsp. infantis strain JCM 11660     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2101541..2125741 2125928..2127799 flank 187


Gene organization within MGE regions


Location: 2101541..2127799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL1660_RS09155 (BL1660_09155) - 2101541..2102629 (-) 1089 WP_256755089.1 ISL3 family transposase -
  BL1660_RS09160 (BL1660_09160) - 2102583..2102858 (+) 276 Protein_1784 transposase -
  BL1660_RS09165 (BL1660_09165) - 2103000..2104412 (+) 1413 WP_032734944.1 ATP-binding protein -
  BL1660_RS09170 (BL1660_09170) - 2104475..2105950 (-) 1476 WP_117789989.1 amino acid permease -
  BL1660_RS09175 (BL1660_09175) - 2106173..2106742 (-) 570 WP_007057465.1 TetR/AcrR family transcriptional regulator -
  BL1660_RS09180 (BL1660_09180) - 2106886..2107587 (+) 702 WP_013141473.1 ABC transporter ATP-binding protein -
  BL1660_RS09185 (BL1660_09185) - 2107676..2111359 (+) 3684 WP_193641093.1 ABC transporter permease -
  BL1660_RS09190 (BL1660_09190) - 2111547..2113070 (+) 1524 WP_013410545.1 amino acid permease -
  BL1660_RS09195 (BL1660_09195) - 2113410..2114906 (+) 1497 WP_193641235.1 RNA-binding domain-containing protein -
  BL1660_RS09200 (BL1660_09200) - 2115210..2119751 (+) 4542 WP_117726830.1 exo-beta-1,6-galactobiohydrolase -
  BL1660_RS10635 - 2120325..2120390 (+) 66 WP_349816200.1 hypothetical protein -
  BL1660_RS10640 - 2122093..2123799 (+) 1707 WP_227484117.1 bacterial Ig-like domain-containing protein -
  BL1660_RS09210 (BL1660_09210) - 2124295..2124858 (-) 564 WP_118088712.1 BRO family protein -
  BL1660_RS09215 (BL1660_09215) - 2125220..2125741 (+) 522 WP_041473941.1 MarR family winged helix-turn-helix transcriptional regulator -
  BL1660_RS09220 (BL1660_09220) rcrP 2125928..2127799 (+) 1872 WP_007054106.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 67987.58 Da        Isoelectric Point: 5.4567

>NTDB_id=492113 BL1660_RS09220 WP_007054106.1 2125928..2127799(+) (rcrP) [Bifidobacterium longum subsp. infantis strain JCM 11660]
MLRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSHMKDIWIAGGKMLLISLGSAACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVVILLAAIVIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTIMNGLMLAVYWIGTYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGKAAEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=492113 BL1660_RS09220 WP_007054106.1 2125928..2127799(+) (rcrP) [Bifidobacterium longum subsp. infantis strain JCM 11660]
ATGCTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCTCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAAACGCCGGGCAGCCACATGAAGGACA
TTTGGATTGCCGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGCGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCGGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGCTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAATCGCCGATCATGGCCGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGAATCGCCGTAGTGATTCTGCTGGCGGCCATCGTCATCATGATGGCCATGGTCATGCCGAAATTCAAGGCCATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGTGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGACACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCATCATGAACGGTCTGATGCTTGCCGTCTACTGGATCGGTACCTACCTGATCGATGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTACTCGACACCGAG
CCGATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGTCAGCGAGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCAAGGCTGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(60-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R0SE98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.183

100

0.49