Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   INV104_RS13850 Genome accession   NC_017591
Coordinates   1813837..1814868 (-) Length   343 a.a.
NCBI ID   WP_000506434.1    Uniprot ID   -
Organism   Streptococcus pneumoniae INV104     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1808837..1819868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INV104_RS09555 (INV104_16460) - 1808983..1809744 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  INV104_RS09560 (INV104_16470) ytpR 1809777..1810403 (-) 627 WP_000578316.1 YtpR family tRNA-binding protein -
  INV104_RS09565 (INV104_16480) - 1810419..1810736 (-) 318 WP_000615767.1 thioredoxin family protein -
  INV104_RS09570 (INV104_16490) - 1810733..1811032 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  INV104_RS13845 - 1811230..1811310 (-) 81 WP_223200442.1 hypothetical protein -
  INV104_RS09575 - 1811317..1811508 (-) 192 WP_001843938.1 cell wall-binding repeat protein -
  INV104_RS09580 (INV104_16510) - 1811669..1812343 (-) 675 WP_000725748.1 LiaF transmembrane domain-containing protein -
  INV104_RS09585 (INV104_16520) - 1812349..1812795 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  INV104_RS09590 (INV104_16530) - 1812909..1813412 (-) 504 WP_000800942.1 phosphatase PAP2 family protein -
  INV104_RS09595 (INV104_16540) - 1813409..1813771 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  INV104_RS13850 (INV104_16550) rcrQ 1813837..1814868 (-) 1032 WP_000506434.1 ABC transporter ATP-binding protein Regulator
  INV104_RS13855 (INV104_16560) rcrP 1814875..1815696 (-) 822 WP_000601685.1 ABC transporter permease Regulator
  INV104_RS13860 (INV104_16570) - 1815713..1816184 (-) 472 Protein_1836 MarR family winged helix-turn-helix transcriptional regulator -
  INV104_RS09615 (INV104_16580) - 1816308..1817024 (-) 717 WP_000532880.1 YebC/PmpR family DNA-binding transcriptional regulator -
  INV104_RS09620 (INV104_16590) ply 1817905..1819320 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  INV104_RS09625 (INV104_16600) - 1819331..1819741 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37996.23 Da        Isoelectric Point: 4.5159

>NTDB_id=49211 INV104_RS13850 WP_000506434.1 1813837..1814868(-) (rcrQ) [Streptococcus pneumoniae INV104]
MGFLLMGALFIVLPRTMVSAKRINQVLYLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGSFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=49211 INV104_RS13850 WP_000506434.1 1813837..1814868(-) (rcrQ) [Streptococcus pneumoniae INV104]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
ATATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTAGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.357

65.306

0.525
  rcrP Streptococcus mutans UA159

37.861

100

0.382

Multiple sequence alignment