Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BL1347_RS00490 Genome accession   NZ_CP062951
Coordinates   130932..132770 (-) Length   612 a.a.
NCBI ID   WP_193641776.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. infantis strain JCM 11347     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 125932..137770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL1347_RS12595 - 126432..126809 (+) 378 WP_227485009.1 hypothetical protein -
  BL1347_RS00470 (BL1347_00470) rsmI 126836..127846 (-) 1011 WP_193641774.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BL1347_RS00475 (BL1347_00475) - 128282..129415 (+) 1134 WP_193641765.1 IS1249 family transposase -
  BL1347_RS00485 (BL1347_00485) - 129781..130788 (+) 1008 WP_193641775.1 FAD:protein FMN transferase -
  BL1347_RS00490 (BL1347_00490) rcrQ 130932..132770 (-) 1839 WP_193641776.1 ABC transporter ATP-binding protein Regulator
  BL1347_RS00495 (BL1347_00495) rcrP 132836..134707 (-) 1872 WP_193641777.1 ABC transporter ATP-binding protein Regulator
  BL1347_RS00500 (BL1347_00500) - 134942..135472 (-) 531 WP_065436543.1 MarR family winged helix-turn-helix transcriptional regulator -
  BL1347_RS00505 (BL1347_00505) - 135617..137140 (-) 1524 WP_193641778.1 amino acid permease -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67029.49 Da        Isoelectric Point: 6.5046

>NTDB_id=492103 BL1347_RS00490 WP_193641776.1 130932..132770(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain JCM 11347]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIVALILGAIGTVCQIIGPDKLKDMTNEIVKGLPAIVNGRPVMRS
VDFGAVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINRLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSATLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMVIMKASQKYFARQQTALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFERYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALNGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGTDHAGGRDVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=492103 BL1347_RS00490 WP_193641776.1 130932..132770(-) (rcrQ) [Bifidobacterium longum subsp. infantis strain JCM 11347]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCGTCGCGCTCATCCTGGGCGCGATCGGCACCGTCTGCCAGATCATCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAGGGCCTGCCCGCCATCGTCAACGGCAGACCGGTGATGCGCTCG
GTCGATTTCGGCGCGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGGCTACGCGAATCGATCTCGGTCAAAATCAACCGGTTGC
CGCTCAAATACTTCGACAAGGTCAGCTACGGCGACGTGCTGTCCCGCATCACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATCACCTCGGCGACGTTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGTCATCATGAAGGCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGACGGCTCTGGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCGTACAACGGCGAAGCGGATTCCATCCGCCGCTTCGAACGGTACAACGCGGACCTCTACGAGTCGGGTTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAACTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCACTCAACGGCCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAAGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAACGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGCAGGCCCTGCTCGGCACGGACCATGCGGGCGGGCGCGACGTGAAGGGCGATGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAGCCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAG
AAAGTCGCCATCGTTGGCCCGACCGGCGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTACGAGATTTCCGG
CGGTTCGATTGCGATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAATGTGCACGACCAGTTCTCCATGGTGCTGC
AGGATACGTGGGTGTTCCGCGGAACCGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAG
GATGCGTGCAAGGCCGTGGGTCTTGACCACTTCATCCGTTCGCTGCCGGACGGCTACGACACCGTGCTCGATGACAAGTC
GTCGTTGTCCCAAGGGCAGAAGCAGCTGCTCACCATCGCCCGCGCGATGGTGCAGGATGCGCCGATCCTGATTCTCGACG
AGGCCACGTCCTCGGTCGACACCCGTACCGAGGAACTGATCCAGAAGGCCATGGACGCGCTGACCGTGGGCCGTACGAGC
TTTGTGATCGCGCATCGCCTCTCCACGATCCGTGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCG
CGGCACGCACGACGAACTGCTGGCGGCGGGCGGTTTTTACGCCGATCTGTACAACAGCCAGTTCGCACTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.592

96.078

0.525