Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BL7050_RS00580 Genome accession   NZ_CP062949
Coordinates   152535..154406 (-) Length   623 a.a.
NCBI ID   WP_008783202.1    Uniprot ID   -
Organism   Bifidobacterium longum subsp. longum strain JCM 7050     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 142253..166896 152535..154406 within 0


Gene organization within MGE regions


Location: 142253..166896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL7050_RS00530 (BL7050_00530) - 142253..142549 (-) 297 WP_010081339.1 hypothetical protein -
  BL7050_RS00535 (BL7050_00535) metG 142969..144834 (-) 1866 WP_032684160.1 methionine--tRNA ligase -
  BL7050_RS00540 (BL7050_00540) - 145151..145798 (+) 648 WP_007052934.1 hypothetical protein -
  BL7050_RS10250 - 145789..146166 (+) 378 WP_007052935.1 hypothetical protein -
  BL7050_RS00550 (BL7050_00550) rsmI 146193..147203 (-) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BL7050_RS00565 (BL7050_00565) - 147784..149202 (-) 1419 WP_032737583.1 MFS transporter -
  BL7050_RS00570 (BL7050_00570) - 149284..150330 (+) 1047 WP_193021058.1 FAD:protein FMN transferase -
  BL7050_RS00575 (BL7050_00575) rcrQ 150483..152321 (-) 1839 WP_193021060.1 ABC transporter ATP-binding protein Regulator
  BL7050_RS00580 (BL7050_00580) rcrP 152535..154406 (-) 1872 WP_008783202.1 ABC transporter ATP-binding protein Regulator
  BL7050_RS00585 (BL7050_00585) - 154593..155114 (-) 522 WP_007052942.1 MarR family winged helix-turn-helix transcriptional regulator -
  BL7050_RS00590 (BL7050_00590) - 155476..156039 (+) 564 WP_007055052.1 BRO family protein -
  BL7050_RS10165 (BL7050_00595) - 156525..159629 (-) 3105 WP_374937485.1 bacterial Ig-like domain-containing protein -
  BL7050_RS10305 - 159934..159999 (-) 66 WP_349816200.1 hypothetical protein -
  BL7050_RS00600 (BL7050_00600) - 160573..165114 (-) 4542 WP_193021062.1 exo-beta-1,6-galactobiohydrolase -

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 68028.48 Da        Isoelectric Point: 5.0180

>NTDB_id=492092 BL7050_RS00580 WP_008783202.1 152535..154406(-) (rcrP) [Bifidobacterium longum subsp. longum strain JCM 7050]
MFRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSDMKDIWIAGGKMLLISLGSVACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVAVLLVSITVMMAMVMPKFKVMQTLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTETQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGEAAEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=492092 BL7050_RS00580 WP_008783202.1 152535..154406(-) (rcrP) [Bifidobacterium longum subsp. longum strain JCM 7050]
ATGTTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAGACGCCGGGCAGCGACATGAAGGACA
TCTGGATCGCGGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGTGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCCGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAGATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGTTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGCATCGCCGTGGCGGTCCTGCTGGTGTCCATCACCGTCATGATGGCCATGGTCATGCCGAAGTTCAAGGTCATGCA
GACCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGCGTGGTGCGCGCCTACAATGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGAGACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGTTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCTTACCTCATCGACGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTCGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTGCTCGACACTGAG
CCAATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGCCAGAGGGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCGAGGCCGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(359-543)

ABC transporter transmembrane region (ABC_membrane)

(54-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.657

100

0.494