Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BL5914_RS09535 Genome accession   NZ_CP062947
Coordinates   2263372..2265243 (+) Length   623 a.a.
NCBI ID   WP_007054106.1    Uniprot ID   A0A4R0SE98
Organism   Bifidobacterium longum subsp. longum strain KCTC 5914     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2215744..2263185 2263372..2265243 flank 187


Gene organization within MGE regions


Location: 2215744..2265243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BL5914_RS09390 (BL5914_09390) tet(W) 2215744..2217663 (+) 1920 WP_000691721.1 tetracycline resistance ribosomal protection protein Tet(W) -
  BL5914_RS09395 (BL5914_09395) - 2217863..2219134 (-) 1272 WP_047379359.1 IS30-like element ISBlo4 family transposase -
  BL5914_RS09400 (BL5914_09400) - 2219227..2219478 (+) 252 WP_007052974.1 hypothetical protein -
  BL5914_RS09405 (BL5914_09405) - 2219594..2221933 (-) 2340 WP_014485228.1 YhgE/Pip domain-containing protein -
  BL5914_RS09410 (BL5914_09410) - 2221930..2224650 (-) 2721 WP_080713976.1 YhgE/Pip domain-containing protein -
  BL5914_RS09415 (BL5914_09415) - 2224943..2225709 (-) 767 Protein_1828 nitroreductase family protein -
  BL5914_RS09420 (BL5914_09420) - 2225892..2226269 (-) 378 WP_007052969.1 DUF4235 domain-containing protein -
  BL5914_RS09425 (BL5914_09425) - 2226361..2227074 (+) 714 WP_007056137.1 histidine phosphatase family protein -
  BL5914_RS09430 (BL5914_09430) - 2227463..2228809 (+) 1347 WP_193020123.1 ABC transporter substrate-binding protein -
  BL5914_RS09435 (BL5914_09435) - 2229064..2230080 (-) 1017 WP_007054086.1 LacI family DNA-binding transcriptional regulator -
  BL5914_RS09440 (BL5914_09440) - 2230463..2231317 (+) 855 WP_007052964.1 carbohydrate ABC transporter permease -
  BL5914_RS09445 (BL5914_09445) - 2231317..2232159 (+) 843 WP_007056981.1 carbohydrate ABC transporter permease -
  BL5914_RS09450 (BL5914_09450) - 2232218..2232823 (+) 606 WP_007056973.1 YesL family protein -
  BL5914_RS09455 (BL5914_09455) - 2233158..2236355 (+) 3198 WP_193020122.1 alpha-L-arabinofuranosidase -
  BL5914_RS09460 (BL5914_09460) - 2236481..2237500 (-) 1020 WP_406741578.1 ISL3 family transposase -
  BL5914_RS09465 (BL5914_09465) istB 2237564..2238328 (-) 765 WP_012472066.1 IS21-like element ISBlo1 family helper ATPase IstB -
  BL5914_RS09470 (BL5914_09470) istA 2238346..2239849 (-) 1504 Protein_1839 IS21 family transposase -
  BL5914_RS09475 (BL5914_09475) - 2240123..2240398 (+) 276 Protein_1840 transposase -
  BL5914_RS09480 (BL5914_09480) - 2240540..2241952 (+) 1413 WP_032734944.1 ATP-binding protein -
  BL5914_RS09485 (BL5914_09485) - 2242015..2243490 (-) 1476 WP_193020121.1 amino acid permease -
  BL5914_RS09490 (BL5914_09490) - 2243678..2244247 (-) 570 WP_007054097.1 TetR/AcrR family transcriptional regulator -
  BL5914_RS09495 (BL5914_09495) - 2244392..2245093 (+) 702 WP_041080951.1 ABC transporter ATP-binding protein -
  BL5914_RS09500 (BL5914_09500) - 2245182..2248802 (+) 3621 WP_193020120.1 FtsX-like permease family protein -
  BL5914_RS09505 (BL5914_09505) - 2248990..2250513 (+) 1524 WP_014485242.1 amino acid permease -
  BL5914_RS09510 (BL5914_09510) - 2250853..2252349 (+) 1497 WP_007052945.1 RNA-binding domain-containing protein -
  BL5914_RS09515 (BL5914_09515) - 2252653..2257194 (+) 4542 WP_193020119.1 exo-beta-1,6-galactobiohydrolase -
  BL5914_RS10105 - 2257768..2257833 (+) 66 WP_349816200.1 hypothetical protein -
  BL5914_RS10110 - 2259536..2261242 (+) 1707 WP_226833384.1 bacterial Ig-like domain-containing protein -
  BL5914_RS09525 (BL5914_09525) - 2261739..2262302 (-) 564 WP_021975086.1 BRO family protein -
  BL5914_RS09530 (BL5914_09530) - 2262664..2263185 (+) 522 WP_041473941.1 MarR family winged helix-turn-helix transcriptional regulator -
  BL5914_RS09535 (BL5914_09535) rcrP 2263372..2265243 (+) 1872 WP_007054106.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 623 a.a.        Molecular weight: 67987.58 Da        Isoelectric Point: 5.4567

>NTDB_id=492083 BL5914_RS09535 WP_007054106.1 2263372..2265243(+) (rcrP) [Bifidobacterium longum subsp. longum strain KCTC 5914]
MLRIMKYLSKAEIGQMLIALVTIVGQVYFDLKLPDYMSDITTLVETPGSHMKDIWIAGGKMLLISLGSAACAIITGYIAA
RVAASFTQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDVTQVQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTLA
TGIAVVILLAAIVIMMAMVMPKFKAMQALTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTIMNGLMLAVYWIGTYLIDAAGLKDKLTVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRIMEVLDTE
PIVENGTKTAADVAKTGQRGTVEFRNVSFTYPDSREAMLEGINFTAEQGQTVAFIGSTGSGKSSLINLVPRFYDTSQGQV
LVDGVDVRDYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDQPGDPAEVEMADTSTPAGRKREAALIAAGKAAEGADIPA
EQLNRVRAAADVAQASEFVARMDGGYSAAIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVRDALA
REAKDSTKLIVAQRIGTIMNADRIVVLDDGKVVGQGTHKELLDNCDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1872 bp        

>NTDB_id=492083 BL5914_RS09535 WP_007054106.1 2263372..2265243(+) (rcrP) [Bifidobacterium longum subsp. longum strain KCTC 5914]
ATGCTTCGCATCATGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCTCTGGTGACCATCGTCGGGCAGGT
CTACTTCGACCTGAAACTGCCCGACTATATGTCAGACATCACCACGCTGGTCGAAACGCCGGGCAGCCACATGAAGGACA
TTTGGATTGCCGGCGGCAAGATGCTGCTCATCTCGCTCGGATCCGCGGCGTGTGCCATCATCACCGGCTACATCGCTGCG
CGCGTGGCGGCCTCGTTCACCCAGCGTCTGCGCTCGCTCGAATTCCGCAAGGTCGAGTCCTTCGGCCCGGCCGAAATGAG
CAAGTTCTCCACCGCCAGCCTCATCACCCGCTCCACCAACGACGTCACGCAGGTGCAGATGTTCATCACCATGGGTCTGC
AGCTCATCGTCAAATCGCCGATTATGGCAGTATGGGCCGTGTGCAAGATCGCCGGCGAAGGCTTCGAATGGACGCTCGCC
ACCGGAATCGCCGTAGTGATTCTGCTGGCGGCCATCGTCATCATGATGGCCATGGTCATGCCGAAATTCAAGGCCATGCA
GGCCCTGACCGACAACATCAACCTCGTGGCCCGCGAGAACCTCACCGGCCTGCGTGTGGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAAGCCAAATTCACCAAGGCCAACAAGGACCTCACCGACACCCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCATCATGAACGGTCTGATGCTTGCCGTCTACTGGATCGGTACCTACCTGATCGATGCCGC
CGGGCTCAAGGACAAGCTCACCGTGTTCTCCAACATGGTGGTGTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTCATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGACGTGTCCGCGCAGCGCATCATGGAGGTACTCGACACCGAG
CCGATCGTCGAGAACGGCACCAAAACCGCCGCCGACGTGGCCAAAACCGGTCAGCGAGGCACCGTGGAATTCCGCAACGT
CAGCTTCACCTACCCGGATTCGCGCGAGGCGATGCTGGAAGGCATCAACTTCACCGCCGAGCAGGGCCAGACGGTGGCGT
TCATCGGCTCCACCGGCTCCGGCAAGTCGTCTCTTATCAATCTCGTGCCGCGCTTCTATGACACCAGCCAAGGCCAGGTG
TTGGTCGACGGCGTGGACGTGCGCGACTACGACCTGAAGGCCCTGCGCGACAAGATCGGCTACGTGCCGCAGCAGTCCGT
GCTGTTCAAGGGCACCGTGGCCTCCAACGTGAGCTACGGCGATCAGCCGGGCGACCCGGCGGAGGTCGAGATGGCCGATA
CCTCCACCCCGGCCGGGCGCAAGCGCGAGGCCGCGTTGATCGCCGCTGGCAAGGCTGCGGAAGGTGCCGATATACCGGCC
GAGCAGCTGAATCGCGTCAGGGCCGCCGCCGACGTGGCGCAGGCCAGCGAGTTCGTGGCGCGCATGGACGGCGGGTATTC
CGCCGCGATCGCCCAAGGCGGATCGAACGTGTCCGGCGGCCAGAAGCAGCGCCTGTCGATTGCGCGCGCGGTGTACCGTC
ACCCGGAAATCCTGATTTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTGCGCGACGCGCTCGCC
CGCGAGGCCAAGGATTCCACCAAGCTCATCGTGGCCCAGCGCATCGGCACCATCATGAACGCCGACCGCATCGTCGTGCT
CGACGACGGCAAGGTCGTGGGTCAGGGCACGCACAAGGAACTGCTCGACAACTGCGACGTATACCGCCAGATCGCCGAAT
CCCAGCTCAGCCAGTCGGAGCTTACGGCGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(60-292)

ABC transporter (ABC_tran)

(359-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R0SE98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.183

100

0.49