Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   KIP77_RS03975 Genome accession   NZ_CP074710
Coordinates   614972..615397 (+) Length   141 a.a.
NCBI ID   WP_000788346.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC 17978     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 609972..620397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP77_RS03965 (KIP77_03960) pilY1 610626..614480 (+) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  KIP77_RS03970 (KIP77_03965) pilY2 614493..614975 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  KIP77_RS03975 (KIP77_03970) pilE 614972..615397 (+) 426 WP_000788346.1 type IV pilin protein Machinery gene
  KIP77_RS03980 (KIP77_03975) rpsP 615544..615795 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  KIP77_RS03985 (KIP77_03980) rimM 615815..616363 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  KIP77_RS03990 (KIP77_03985) trmD 616409..617149 (+) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KIP77_RS03995 (KIP77_03990) rplS 617357..617725 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  KIP77_RS04000 (KIP77_03995) - 617777..618718 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  KIP77_RS04005 (KIP77_04000) - 618833..619867 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15282.50 Da        Isoelectric Point: 7.8144

>NTDB_id=492079 KIP77_RS03975 WP_000788346.1 614972..615397(+) (pilE) [Acinetobacter baumannii strain ATCC 17978]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKMVNNRYPSNTTIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=492079 KIP77_RS03975 WP_000788346.1 614972..615397(+) (pilE) [Acinetobacter baumannii strain ATCC 17978]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATGGTGAATAACCGTTATCCTTCAAATACAACTATACAATCAATTTATGGCTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

99.291

100

0.993
  comF Acinetobacter baylyi ADP1

52.857

99.291

0.525