Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IIE26_RS15885 Genome accession   NZ_CP062790
Coordinates   3138075..3140444 (-) Length   789 a.a.
NCBI ID   WP_071156906.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain YPW-V2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3133075..3145444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE26_RS15870 (IIE26_15870) dtd 3134627..3135067 (-) 441 WP_009333083.1 D-aminoacyl-tRNA deacylase -
  IIE26_RS15875 (IIE26_15875) - 3135082..3137277 (-) 2196 WP_034296607.1 RelA/SpoT family protein -
  IIE26_RS15880 (IIE26_15880) - 3137572..3138084 (-) 513 WP_009333085.1 adenine phosphoribosyltransferase -
  IIE26_RS15885 (IIE26_15885) recJ 3138075..3140444 (-) 2370 WP_071156906.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IIE26_RS15890 (IIE26_15890) - 3140607..3140924 (-) 318 WP_019382912.1 lipopolysaccharide assembly LapA domain-containing protein -
  IIE26_RS15895 (IIE26_15895) - 3140949..3141851 (-) 903 WP_071156904.1 cation diffusion facilitator family transporter -
  IIE26_RS15900 (IIE26_15900) secDF 3141992..3144256 (-) 2265 WP_009333089.1 protein translocase subunit SecDF -
  IIE26_RS15905 (IIE26_15905) - 3144552..3144848 (-) 297 WP_009333090.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88229.56 Da        Isoelectric Point: 5.3213

>NTDB_id=491401 IIE26_RS15885 WP_071156906.1 3138075..3140444(-) (recJ) [Cytobacillus oceanisediminis strain YPW-V2]
MLHSRTRWIVRQTQEDKVQQLSKELNISPLAASLLINRGMDTVDSARYFLLDKDQEFHDPFLMTDMAKAVSRIKEAIEKQ
EPILIFGDYDADGVTSTSVMMMALRDLGADVQFYIPNRFTEGYGPNIPAFEQAADTGIRLIITVDTGISAVNEAKAAKEL
GMDLIITDHHEPGHELPEAWAIVHPKHPESRYPFRELAGVGVAFKLAHALYGEMPDHLLEIAAIGTIADLVSLTGENRLI
AKRGIQKLKSTKNTGLKALFKAAGIELPSINEETIGFTIGPRLNAAGRLESADPAVDLLLTNDPYEAQAIAEEIETLNKE
RQAIVNDIAAQAVKEVETNFPISKNSVIVVGKEGWNAGVIGIVASKLVEKFYRPAIVLSYDSDKGLAKGSARSIQGFDLF
KNLSECRDILPHFGGHPMAAGMTLSIESVDELRDRLNTLANEQLTEEDFIPVTSIDGVFHLKDISLSSIEEMQLLAPFGM
GNPKPKVMIKEANIAAMRKIGSDQTHIKVTIENDGSSLDGIGFGLGHLHEHISPYSKLSVIGELSINEWNNNKKPQIFLQ
DMAVNSWQLFDIRSLKRLERLQSVIPEVNTTWIFFNEEHISKFRTYAGDSMVKISSEEDAEALKLDGSNIVLADMPPSKE
MLAHVFSGKKPARIYAHFYKEDSDYFSTIPTRDHFKWYFALLAKKGSVDIRRHGNDIAKHKGWSRETVDFMSQVFFELDF
VKINNGVISLNNTSIKRDLADSRTYQLKQAQYTLESDLLYSSFQQLKDWFDEVMQGAVKLEEAKEEKWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=491401 IIE26_RS15885 WP_071156906.1 3138075..3140444(-) (recJ) [Cytobacillus oceanisediminis strain YPW-V2]
ATGTTACATTCAAGAACGCGATGGATTGTTCGGCAAACACAGGAGGATAAGGTGCAGCAGCTTTCAAAGGAATTGAATAT
TTCTCCACTGGCCGCATCGCTGTTAATTAATCGCGGAATGGATACCGTTGATTCAGCACGGTATTTTTTATTGGATAAAG
ACCAGGAATTTCATGATCCTTTTTTAATGACAGATATGGCAAAAGCTGTTTCCAGAATAAAAGAAGCAATAGAAAAACAG
GAACCTATCTTAATTTTTGGTGATTATGATGCGGATGGAGTGACAAGCACTTCTGTCATGATGATGGCACTTAGAGATCT
CGGTGCTGACGTCCAATTCTACATACCGAATCGATTTACTGAAGGGTATGGACCAAATATCCCGGCTTTTGAACAAGCCG
CTGATACTGGCATCCGTTTAATTATTACCGTAGATACAGGGATATCGGCTGTAAACGAAGCAAAGGCTGCAAAAGAGCTT
GGAATGGATTTGATTATTACAGATCACCATGAGCCTGGCCATGAGCTTCCTGAAGCATGGGCAATTGTGCATCCTAAGCA
TCCGGAAAGCAGATACCCATTCCGGGAACTGGCCGGTGTTGGAGTAGCATTTAAACTTGCACATGCGCTATATGGTGAAA
TGCCTGATCACCTCTTGGAAATAGCTGCAATCGGCACAATTGCCGACCTTGTTTCTTTAACGGGAGAGAACAGGCTTATT
GCCAAGCGCGGGATTCAAAAGCTGAAATCAACTAAGAATACAGGTTTGAAAGCCTTGTTTAAAGCGGCTGGAATTGAACT
TCCATCCATTAATGAAGAAACAATCGGCTTTACAATCGGGCCTCGCCTCAATGCAGCCGGCAGGCTTGAAAGTGCGGATC
CGGCAGTGGATTTACTTCTGACAAATGATCCTTATGAAGCACAAGCCATTGCTGAAGAAATTGAAACGTTAAATAAAGAG
AGGCAAGCTATTGTCAATGACATTGCAGCACAAGCGGTTAAAGAGGTTGAAACTAATTTTCCAATCAGTAAGAATTCAGT
AATTGTTGTAGGCAAAGAAGGCTGGAATGCCGGTGTAATTGGAATAGTAGCTTCGAAGCTTGTTGAAAAGTTTTACCGCC
CAGCTATTGTTCTCAGTTATGACAGTGATAAAGGGCTGGCAAAGGGATCAGCAAGAAGTATTCAAGGTTTTGATCTGTTC
AAAAATCTTTCTGAATGCCGGGATATCCTTCCCCACTTTGGGGGCCATCCAATGGCGGCAGGAATGACCTTGTCAATTGA
ATCGGTCGATGAACTCAGGGATAGACTGAATACTCTTGCAAATGAACAGCTGACCGAGGAAGATTTTATTCCGGTAACCA
GCATTGATGGCGTCTTCCATCTAAAGGATATCAGCCTCTCTTCTATTGAAGAAATGCAGCTGCTTGCCCCATTTGGGATG
GGAAATCCAAAACCGAAAGTCATGATAAAAGAGGCCAATATTGCCGCTATGAGAAAAATCGGATCTGATCAAACTCATAT
AAAGGTCACCATCGAAAATGATGGATCTTCCCTTGATGGAATCGGCTTTGGCCTCGGACATTTGCATGAGCATATTTCAC
CATATTCCAAGCTATCGGTTATTGGCGAATTATCCATTAATGAATGGAATAATAATAAAAAACCGCAAATCTTCCTGCAG
GATATGGCAGTGAACTCCTGGCAGCTATTTGATATCCGGAGTTTAAAGCGGCTCGAAAGGCTCCAAAGCGTCATTCCTGA
GGTAAACACTACTTGGATATTCTTTAATGAGGAACATATATCCAAATTCAGGACATATGCAGGGGATAGTATGGTGAAAA
TATCATCTGAAGAGGATGCAGAAGCATTAAAACTAGATGGCTCAAACATCGTGCTTGCTGATATGCCGCCTTCAAAGGAA
ATGCTTGCTCATGTATTCTCCGGAAAAAAACCTGCCAGAATTTATGCTCATTTTTATAAAGAGGACAGTGACTATTTCAG
CACTATTCCAACAAGAGATCATTTTAAGTGGTATTTTGCCCTGCTTGCTAAAAAAGGCTCGGTCGATATCAGGCGTCATG
GGAATGATATAGCGAAGCATAAGGGATGGAGCAGGGAAACGGTAGATTTTATGTCTCAAGTGTTTTTTGAATTGGATTTT
GTTAAAATAAATAATGGTGTCATTTCGTTAAACAATACATCAATTAAACGTGATTTAGCTGATTCGCGAACCTATCAGCT
TAAACAGGCACAATACACTCTTGAGAGCGATTTGCTCTATTCATCCTTTCAGCAGCTCAAAGACTGGTTTGATGAAGTTA
TGCAAGGGGCTGTAAAACTTGAGGAGGCAAAGGAAGAAAAATGGACTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(83-226)

DHHA1 domain (DHHA1)

(315-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.314

98.352

0.554