Detailed information NTG0491400

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: IIE26_RS15790
• Genome accession: NZ_CP062790
• Coordinates: 3116515..3118941 (-)
• Length: 808 a.a.
• NCBI ID: WP_071156914.1
• Uniprot ID: -
• Organism: Cytobacillus oceanisediminis strain YPW-V2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3111515..3123941

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IIE26_RS15760 (IIE26_15760)	-	3113916..3115004 (-)	1089	WP_019382894.1	AI-2E family transporter	-
IIE26_RS15765 (IIE26_15765)	-	3115162..3115296 (-)	135	WP_083390473.1	YrzQ family protein	-
IIE26_RS15770 (IIE26_15770)	-	3115321..3115512 (-)	192	WP_009333064.1	hypothetical protein	-
IIE26_RS15775 (IIE26_15775)	-	3115528..3115998 (-)	471	WP_192907778.1	PRC-barrel domain-containing protein	-
IIE26_RS15780 (IIE26_15780)	-	3116100..3116252 (-)	153	WP_009333066.1	hypothetical protein	-
IIE26_RS15785 (IIE26_15785)	-	3116290..3116451 (-)	162	WP_175502159.1	hypothetical protein	-
IIE26_RS15790 (IIE26_15790)	recD2	3116515..3118941 (-)	2427	WP_071156914.1	ATP-dependent RecD-like DNA helicase	Machinery gene
IIE26_RS15795 (IIE26_15795)	-	3118966..3119631 (-)	666	WP_019382898.1	tetratricopeptide repeat protein	-
IIE26_RS15800 (IIE26_15800)	mnmA	3119747..3120862 (-)	1116	WP_192907779.1	tRNA 2-thiouridine(34) synthase MnmA	-
IIE26_RS15805 (IIE26_15805)	-	3120919..3122061 (-)	1143	WP_009333071.1	cysteine desulfurase family protein	-
IIE26_RS15810 (IIE26_15810)	cymR	3122130..3122549 (-)	420	WP_009333072.1	cysteine metabolism transcriptional regulator CymR	-
IIE26_RS15815 (IIE26_15815)	-	3122549..3123235 (-)	687	WP_009333073.1	YczE/YyaS/YitT family protein	-

Sequence

Protein

• Length: 808 a.a.
• Molecular weight: 91330.47 Da
• Isoelectric Point: 4.9779

>NTDB_id=491400 IIE26_RS15790 WP_071156914.1 3116515..3118941(-) (recD2) [Cytobacillus oceanisediminis strain YPW-V2]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEQETYIFYGEFKDHPKFG
VQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSLLDKVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQSNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILEM
ESMQAGHVYTEAKPLLQSVKKLLEENKRDSIEYRDISNELIKLEEEGKIMAEGQKIYLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGTEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANISAQQTDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGTRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVILPIVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKIGVERADEQARLTTLSEKLRDAIPLNGETIQEDTAELSLPETLTLEERLLQADPMIGMGNITPY
DFMEKEYS

Nucleotide

• Length: 2427 bp

>NTDB_id=491400 IIE26_RS15790 WP_071156914.1 3116515..3118941(-) (recD2) [Cytobacillus oceanisediminis strain YPW-V2]
ATGGAGAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGAAAGTTCATAAAAGGCAGACATCTTGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGAATCCGGGTTGATGAAACGAATGACTCTTATGATGAAAAAGAAGCGGTCA
TTACAGGTTATCTGCCAAAGATGCATGAGCAGGAAACGTATATTTTCTACGGTGAATTCAAGGATCACCCTAAGTTCGGT
GTCCAATTCCACGCAAGCCATTACCGGAAAGATCTTCCCCAGACCAAACAAGGTGTAGCCAATTATTTATCAAGCGAATT
ATTTAAAGGGATTGGAAAGAAAACCGCCGAGCAAATCGTTGAAACACTTGGCGAAGATGCGATTACACGCATTCTGAATC
AGCCGTCTCTTCTCGATAAGGTTCCAAAACTGTCACCTGAAAAAGCAAAATTGCTTTACGACACGCTTATGGAACATCAA
GGCCTTGAGCAAGCCATGATTGCGCTAAATCAATATGGTTTTGGTCCGCAGCTTTCCATGAGAATTTATCAAGTATATAA
AGAAATGACGATTGAAGTCGTCCAAAGCAATCCGTATAAGCTGGTTGAGGATATAGAAGGAGTCGGCTTTGGCCGTGCAG
ATGAACTGGGATATCAAATCGGCATATCAGGTAATCATCCTGATCGTATTAAAGCAGCCTGCCTCTACATACTTGAAATG
GAAAGCATGCAGGCAGGCCATGTTTATACTGAAGCAAAACCTCTTCTGCAAAGTGTGAAGAAGCTTTTAGAAGAAAATAA
GCGTGATAGCATTGAATACAGGGATATATCCAATGAACTGATTAAGCTTGAAGAGGAAGGGAAAATCATGGCTGAAGGCC
AAAAAATATACCTTCCATCCCTTTACTTTTCTGAAAAGGGACTTGTAACCAATATTAAACGGATCCTTAAGCAAACACAA
TATGATGAACAGTTTCCGGAGTCGGAATTTCTTTTGGCCCTTGGCAATCTGGAGGAACGTCTGGGTGTTCAGTACGCCCC
GACCCAAAAAGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATACTGACTGGCGGCCCTGGTACAGGAAAAACAA
CCGTTATTAAAGGAATTGTTGAGTTATATGCCGAACTGCATGGCTGCTCCCTGGAGCCAAAAGACTATAAAAAGGAAGAG
CCTTTTCCCTTCCTGCTGGCTGCGCCTACAGGAAGGGCTGCAAAACGGATGGCCGAGTCAACAGGGCTGCCTGCGGTAAC
CATTCACCGCCTGCTTGGCTGGAATGGGACCGAAGGGTTTGACCGGCATGAAGAGAGTCCATTGGAAGGCAGGATTTTAA
TTGTAGATGAGACATCAATGGTTGATGTTTGGCTTGCTAATCAGCTTTTCAAGGCTCTCCCTGAAAATATGCAGGTGATC
CTTGTGGGGGATGAAGATCAGCTGCCCTCAGTGGGGCCAGGCCAGGTTTTAAAAGATCTTTTGCGTTCAGAACGTATTCC
TACCGTTCGTTTAACAGATATATACAGGCAGGCTGAAGGATCCTCAATCATTGAATTGGCTCATGAAATGAAAAAAGGCA
AACTTCCGGCGAACATTTCTGCACAGCAGACAGATCGTTCCTTTATCAAATGCCAGCCGGGCCAAATTGCGGATGTTGTT
GAAAAAGTTGTTCTGAATGCCAAGAAGAAAGGTTATTCTTCAAAAGATATTCAGGTGCTTGCCCCTATGTACCGCGGACC
TGCAGGAATTGACAGGCTAAACGAAATATTGCAGGAAATACTAAATCCAAATCCTGATGGAACGAGAAAAGAGCTGTCCT
TCGGTGATGTGAAATACAGAATCGGCGATAAAGTCCTTCAGCTTGTCAATCAGCCTGAGAATAATGTGTTTAATGGGGAT
ATGGGTGAGATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTCGATGGTGC
AGAAGCTACTTATACAAGGCAGGATCTTAATCAGATCACACATGCCTACTGCTGTTCAGTCCATAAATCCCAGGGAAGTG
AATTCCCTATCGTCATTTTGCCAATTGTTAAAAGCTATTACAGGATGCTTAGGAGAAATCTTCTTTATACCGCCATTACC
CGCAGCAGACAGTTTTTGATACTGTGCGGTGAAGAAGATGCGTTGAAAATCGGTGTGGAACGTGCGGATGAACAGGCCCG
ACTGACAACTCTTTCAGAAAAGCTTAGAGATGCCATTCCATTAAATGGTGAAACAATACAGGAAGATACAGCAGAGTTAT
CCCTGCCTGAAACCTTAACCCTTGAAGAAAGGCTTCTCCAAGCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTATGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-664)

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-249)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• AAA domain (AAA_30) (345-552)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	62.108	98.639	0.613