Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   J5O00_RS01785 Genome accession   NZ_CP074415
Coordinates   353721..354446 (-) Length   241 a.a.
NCBI ID   WP_029806006.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 64     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348721..359446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5O00_RS01760 - 349839..350330 (+) 492 WP_005458943.1 type II secretion system protein M -
  J5O00_RS01765 - 350332..351093 (+) 762 WP_021822200.1 type II secretion system protein N -
  J5O00_RS01770 cysQ 351380..352207 (-) 828 WP_005458987.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  J5O00_RS01775 nudE 352249..352818 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  J5O00_RS01780 nfuA 353039..353623 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  J5O00_RS01785 comF 353721..354446 (-) 726 WP_029806006.1 amidophosphoribosyltransferase Machinery gene
  J5O00_RS01790 bioH 354531..355298 (+) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  J5O00_RS01795 - 355422..355886 (+) 465 WP_005459035.1 hypothetical protein -
  J5O00_RS01800 - 356022..358343 (-) 2322 WP_029806004.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27663.84 Da        Isoelectric Point: 8.9991

>NTDB_id=491357 J5O00_RS01785 WP_029806006.1 353721..354446(-) (comF) [Vibrio parahaemolyticus strain 64]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYLYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHAQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=491357 J5O00_RS01785 WP_029806006.1 353721..354446(-) (comF) [Vibrio parahaemolyticus strain 64]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTGTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGCCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGCCCAGTCGCAGCGCGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485