Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   KHA81_RS08000 Genome accession   NZ_CP074391
Coordinates   1568854..1569303 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain L-17     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1563854..1574303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS07960 ctaE 1563983..1564606 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  KHA81_RS07965 ctaF 1564609..1564941 (+) 333 WP_015388278.1 cytochrome c oxidase subunit IVB -
  KHA81_RS07970 ctaG 1564966..1565850 (+) 885 WP_003154480.1 cytochrome c oxidase assembly factor CtaG -
  KHA81_RS07975 - 1565884..1566243 (-) 360 WP_003154479.1 YugN family protein -
  KHA81_RS07980 - 1566384..1566827 (+) 444 WP_003154478.1 CBS domain-containing protein -
  KHA81_RS07985 - 1566912..1567952 (+) 1041 WP_015388277.1 CAP domain-containing protein -
  KHA81_RS07990 - 1568118..1568528 (+) 411 WP_015388276.1 YlbD family protein -
  KHA81_RS07995 - 1568544..1568783 (+) 240 WP_003154475.1 YlbE-like family protein -
  KHA81_RS08000 ylbF 1568854..1569303 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  KHA81_RS08005 - 1569362..1569634 (+) 273 WP_003154470.1 YlbG family protein -
  KHA81_RS08010 - 1569725..1569934 (+) 210 WP_015388275.1 hypothetical protein -
  KHA81_RS08015 rsmD 1569934..1570488 (+) 555 WP_003154468.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  KHA81_RS08020 coaD 1570493..1570975 (+) 483 WP_003154467.1 pantetheine-phosphate adenylyltransferase -
  KHA81_RS08025 ylbJ 1570994..1572220 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  KHA81_RS08030 - 1572400..1573179 (+) 780 WP_015388274.1 patatin family protein -
  KHA81_RS08035 sepM 1573185..1574207 (+) 1023 WP_003154464.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=491180 KHA81_RS08000 WP_003154472.1 1568854..1569303(+) (ylbF) [Bacillus amyloliquefaciens strain L-17]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=491180 KHA81_RS08000 WP_003154472.1 1568854..1569303(+) (ylbF) [Bacillus amyloliquefaciens strain L-17]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAGCTCGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGATGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTGCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGCTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879