Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   MSA_RS08925 Genome accession   NC_021486
Coordinates   1709911..1712331 (+) Length   806 a.a.
NCBI ID   WP_016481179.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1704911..1717331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS08905 (MSA_18430) - 1707313..1707855 (-) 543 WP_016481176.1 CvpA family protein -
  MSA_RS08910 (MSA_18440) zapA 1707858..1708169 (-) 312 WP_000448289.1 cell division protein ZapA -
  MSA_RS08915 (MSA_18450) rnhC 1708280..1709173 (+) 894 WP_041165703.1 ribonuclease HIII -
  MSA_RS08920 (MSA_18460) lepB 1709189..1709782 (+) 594 WP_016481178.1 signal peptidase I -
  MSA_RS08925 (MSA_18470) recD/recD2/recDB 1709911..1712331 (+) 2421 WP_016481179.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MSA_RS08930 (MSA_18480) - 1712445..1712927 (+) 483 WP_000255474.1 hypothetical protein -
  MSA_RS08935 (MSA_18490) dinB 1712983..1714077 (-) 1095 WP_000904560.1 DNA polymerase IV -
  MSA_RS08940 (MSA_18500) pflB 1714262..1716574 (+) 2313 WP_000246708.1 formate C-acetyltransferase -
  MSA_RS08945 (MSA_18510) - 1716675..1717049 (+) 375 WP_000931879.1 pyridoxamine 5'-phosphate oxidase family protein -

Sequence

Protein


Download         Length: 806 a.a.        Molecular weight: 90933.37 Da        Isoelectric Point: 4.7449

>NTDB_id=49115 MSA_RS08925 WP_016481179.1 1709911..1712331(+) (recD/recD2/recDB) [Streptococcus agalactiae ILRI005]
MEVFFTGTIERIIFENASNFFKILLLEIEDTDSDFDDVEVIITGTMADVIEGEEYTFWGTLTQHPKYGEQLQSVRYERAK
PTSGGLVKYFSSEQFKGIGKKTAQRIVELYGDNTIDKILASPEQLSTISGLSKINREAFIAKLKLNYGTEQVLAKLAEYG
LSNRAAIQIFDHYKEESLEVINENPYQLVEDIQGIGFKIADQLAEQVGIESDSPKRFRAAIIHTLVESSMEQGDTYIEAR
TLLEKTITLLEEARQIELDPSIVAKELTNLIAEDKVQHIGTKIFSNTLFFAEEGIKKNLQRILNQPLDKQLSHKDIDREI
RDIQKSLNIHYDNIQEKAIREALLSKVFILTGGPGTGKTTVINGIIEAYSELHHIDLNKNDIPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDSDYQSLDDYLDCSLIIIDEFSMVDTWLANQLFDALDSHTQVIIVGDSDQLPSVGPGQVLADLL
NINALPHVKLEKIFRQSEESTIVTLANQMRQGFLPEDFTAKKADRSYFEASANIIPNMISKIVQSALKSGIEAHEIQILA
PMYRGQAGINNLNLIMQNLLNPLKDNNQFTFNDINFRIGDKVLHLVNDTELNVFNGDIGYITDLIPAKYTESKQDEIYMT
FDGQEVIYQRKEWLKITLAYAMSIHKSQGSEFQVVILPITRQSGRMLQRNLIYTAITRSKSKLILLGEIGAFDFAVKNEG
AKRNTYLIERFENKQEIANSQKIEDSSIDQKIDNTIINTSIPKTATPIEQTNLSKITYRLTEENYLTIDPMIGINQQDIS
AIFDSK

Nucleotide


Download         Length: 2421 bp        

>NTDB_id=49115 MSA_RS08925 WP_016481179.1 1709911..1712331(+) (recD/recD2/recDB) [Streptococcus agalactiae ILRI005]
ATGGAAGTATTTTTTACAGGAACCATTGAACGCATTATATTTGAAAATGCCAGCAATTTTTTTAAAATATTACTTCTGGA
AATCGAAGATACGGATAGCGATTTTGATGATGTAGAAGTAATTATTACTGGTACTATGGCCGACGTTATAGAGGGAGAAG
AATATACTTTTTGGGGAACACTAACCCAACATCCAAAATACGGCGAGCAACTACAAAGTGTACGCTATGAAAGAGCCAAG
CCTACTTCAGGTGGCCTTGTGAAATACTTTTCTAGCGAACAATTTAAAGGAATTGGTAAAAAGACTGCCCAACGCATCGT
AGAACTCTATGGAGATAATACCATTGATAAAATCCTTGCATCCCCTGAACAGTTAAGTACAATCTCAGGACTATCAAAAA
TTAATAGAGAAGCATTCATCGCTAAACTGAAACTCAATTATGGAACAGAGCAAGTTTTAGCTAAACTCGCTGAATATGGG
TTAAGCAATCGTGCTGCTATTCAAATATTTGATCACTATAAAGAAGAATCACTTGAAGTGATAAACGAAAATCCTTATCA
ACTTGTTGAGGATATCCAAGGTATCGGTTTTAAAATAGCTGATCAACTTGCTGAACAAGTCGGTATTGAAAGTGATTCTC
CTAAACGCTTTCGTGCTGCTATTATTCATACTTTAGTTGAGTCTTCTATGGAGCAAGGAGATACCTATATTGAGGCTCGT
ACTCTCTTGGAAAAAACCATTACTCTCCTTGAAGAAGCTCGTCAAATCGAACTAGATCCTTCAATTGTTGCTAAGGAATT
GACAAATTTAATTGCAGAAGATAAAGTGCAACATATTGGAACTAAAATTTTTAGTAATACTCTATTTTTTGCCGAAGAAG
GCATCAAAAAAAACTTACAACGAATACTAAATCAGCCCCTTGATAAACAACTAAGTCACAAAGATATTGACCGTGAAATC
AGAGATATTCAAAAATCTTTAAATATCCACTACGATAATATCCAAGAAAAAGCTATTAGAGAAGCTTTACTAAGTAAGGT
ATTTATCTTGACTGGTGGCCCAGGAACAGGTAAAACAACAGTTATAAATGGTATTATTGAAGCCTATTCCGAGTTACATC
ATATTGATTTAAACAAAAATGATATTCCTATTATACTTGCTGCTCCTACAGGTCGTGCTGCTAGACGCATGAATGAACTT
ACCGGTTTACCGAGTGCTACTATTCATAGGCATTTGGGATTAAACGGAGATAGTGACTATCAAAGTCTAGATGACTATCT
AGATTGTTCCTTAATTATCATTGATGAATTTTCAATGGTTGACACTTGGCTTGCTAATCAATTATTTGACGCTTTGGACT
CGCACACACAAGTTATTATTGTCGGAGATAGTGATCAATTACCATCTGTAGGTCCAGGACAAGTTCTAGCAGATCTTTTA
AATATAAATGCACTTCCACACGTTAAACTTGAAAAAATTTTTAGACAATCAGAAGAATCAACTATTGTGACTTTAGCTAA
TCAAATGAGACAGGGCTTTTTGCCAGAGGACTTTACAGCTAAAAAAGCCGATCGCTCATACTTTGAAGCATCTGCTAATA
TCATCCCAAATATGATTTCTAAAATTGTTCAATCTGCACTTAAGAGCGGTATTGAAGCTCATGAAATTCAAATTTTAGCT
CCCATGTATCGTGGCCAAGCAGGTATTAATAATCTTAACCTTATCATGCAAAATCTTCTCAATCCATTAAAAGATAATAA
CCAATTTACTTTTAATGATATAAATTTCCGAATAGGAGATAAAGTGTTACATTTAGTCAACGATACAGAGCTTAATGTGT
TTAATGGGGATATTGGTTACATAACGGATCTTATACCAGCCAAATATACTGAGAGCAAGCAAGATGAGATTTATATGACT
TTTGACGGTCAAGAAGTTATCTATCAACGCAAAGAATGGCTTAAAATAACACTAGCCTATGCTATGAGTATTCATAAATC
ACAGGGGTCTGAATTTCAAGTTGTTATTCTGCCAATAACGAGACAGAGTGGTCGAATGTTACAGCGAAACCTTATTTATA
CAGCTATTACGAGATCTAAAAGTAAACTAATACTTTTAGGAGAAATTGGTGCATTTGATTTCGCTGTTAAAAACGAGGGG
GCAAAGCGCAATACTTATCTGATAGAAAGATTTGAAAACAAGCAAGAAATAGCTAATTCTCAAAAAATTGAAGATAGCTC
AATAGATCAAAAGATTGACAACACAATAATTAATACGTCCATTCCAAAAACAGCCACGCCAATTGAGCAGACTAACCTTT
CAAAAATAACTTATCGCCTAACTGAAGAAAATTATTTAACAATCGATCCAATGATTGGTATTAATCAACAAGATATAAGT
GCGATTTTTGATAGTAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-706)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-638)

AAA domain (AAA_30)

(332-520)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

43.658

92.928

0.406