Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   MSA_RS08715 Genome accession   NC_021486
Coordinates   1663230..1664015 (-) Length   261 a.a.
NCBI ID   WP_016481152.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1658230..1669015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS08695 (MSA_17960) - 1659943..1660773 (-) 831 WP_000390093.1 pyruvate, water dikinase regulatory protein -
  MSA_RS08700 (MSA_17970) - 1660784..1661434 (-) 651 WP_144312760.1 helix-turn-helix transcriptional regulator -
  MSA_RS08705 (MSA_17980) - 1661603..1662568 (+) 966 WP_016481150.1 3-hydroxyacyl-CoA dehydrogenase -
  MSA_RS08710 (MSA_17990) - 1662615..1663163 (-) 549 WP_016481151.1 isochorismatase family cysteine hydrolase -
  MSA_RS08715 (MSA_18000) codY 1663230..1664015 (-) 786 WP_016481152.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  MSA_RS08720 (MSA_18010) - 1664141..1665352 (-) 1212 WP_000688108.1 pyridoxal phosphate-dependent aminotransferase -
  MSA_RS08725 (MSA_18020) - 1665619..1666071 (+) 453 WP_000080032.1 universal stress protein -
  MSA_RS08730 (MSA_18030) - 1666127..1667509 (-) 1383 WP_000974895.1 HAD-IIB family hydrolase -
  MSA_RS08735 (MSA_18040) - 1667578..1668540 (+) 963 WP_000723060.1 asparaginase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28958.06 Da        Isoelectric Point: 4.4468

>NTDB_id=49109 MSA_RS08715 WP_016481152.1 1663230..1664015(-) (codY) [Streptococcus agalactiae ILRI005]
MPNLLEKTRKITSILQRSVDSLDAELPYNTMAAQLADIIDCNACIINGGGNLLGYAMKYKTNTDRVEEFFETKQFPDYYV
KSASRVYDTEANLSVDNDLSIFPVETKENFQDGITTIAPIYGGGMRLGTFIIWRNDKEFSDDDLILVEIASTVVGIQLLN
LQTENLEENIRKQTAVTMAINTLSYSEMKAVAAILGDLDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=49109 MSA_RS08715 WP_016481152.1 1663230..1664015(-) (codY) [Streptococcus agalactiae ILRI005]
ATGCCGAATTTATTAGAAAAAACTAGAAAAATTACATCCATCTTACAGCGTTCCGTAGATAGCTTAGATGCCGAATTACC
ATATAATACAATGGCGGCTCAATTAGCTGATATTATTGACTGTAACGCATGTATTATTAATGGTGGTGGTAACTTACTTG
GCTATGCCATGAAATATAAAACAAACACTGACCGTGTGGAAGAATTTTTTGAAACAAAACAATTCCCAGATTACTATGTT
AAATCTGCTAGTCGTGTTTATGATACAGAAGCTAACTTATCAGTAGATAATGATTTGTCAATTTTCCCAGTTGAGACAAA
GGAAAACTTCCAAGATGGTATTACAACAATCGCTCCAATTTATGGTGGTGGAATGCGCTTGGGAACATTTATTATCTGGC
GTAATGATAAAGAATTTAGCGACGATGATTTGATTTTAGTTGAAATTGCAAGCACCGTTGTTGGTATTCAATTACTTAAC
CTTCAAACAGAAAATCTAGAAGAAAATATTCGTAAACAAACAGCGGTGACGATGGCTATCAACACTCTATCTTATTCAGA
AATGAAAGCTGTAGCTGCTATCTTAGGAGATTTAGATGGACTTGAAGGACGCCTAACGGCATCTGTTATTGCAGACCGTA
TTGGAATTACACGTTCCGTTATTGTAAATGCTCTTCGTAAATTGGAGTCTGCGGGAATCATTGAGAGCCGCTCACTCGGT
ATGAAAGGAACATACCTCAAAGTTATTAACGAAGGTATTTTTGACAAATTAAAAGAATATAATTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

67.05

100

0.671
  codY Bacillus subtilis subsp. subtilis str. 168

51.417

94.636

0.487

Multiple sequence alignment