Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MSA_RS07075 Genome accession   NC_021486
Coordinates   1339002..1340741 (-) Length   579 a.a.
NCBI ID   WP_016480964.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1334002..1345741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS07055 (MSA_14550) - 1334681..1335091 (-) 411 WP_000594936.1 peptide deformylase -
  MSA_RS07060 (MSA_14560) gdhA 1335161..1336510 (-) 1350 WP_016480962.1 NADP-specific glutamate dehydrogenase -
  MSA_RS07065 (MSA_14570) - 1336678..1337187 (+) 510 WP_000870955.1 DUF308 domain-containing protein -
  MSA_RS07070 (MSA_14580) rcrQ 1337228..1338997 (-) 1770 WP_016480963.1 ABC transporter ATP-binding protein Regulator
  MSA_RS07075 (MSA_14590) rcrP 1339002..1340741 (-) 1740 WP_016480964.1 ABC transporter ATP-binding protein Regulator
  MSA_RS07080 (MSA_14600) - 1340808..1341281 (-) 474 WP_016480965.1 GNAT family N-acetyltransferase -
  MSA_RS07085 (MSA_14610) - 1341278..1343146 (-) 1869 WP_016480966.1 ABC-F family ATP-binding cassette domain-containing protein -
  MSA_RS07090 (MSA_14620) - 1343157..1344365 (-) 1209 WP_001238954.1 CCA tRNA nucleotidyltransferase -
  MSA_RS07095 (MSA_14630) - 1344550..1345398 (-) 849 WP_016480968.1 DegV family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64837.28 Da        Isoelectric Point: 6.0784

>NTDB_id=49103 MSA_RS07075 WP_016480964.1 1339002..1340741(-) (rcrP) [Streptococcus agalactiae ILRI005]
MAYIWSYLKRYPNWLWLDLLGAMLFVTVILGMPTALAGMIDNGVTKGDRTGVYLWTFIMFIFVVLGIIGRITMAYASSRL
TTTMIRDMRNDMYAKLQEYSHHEYEQIGVSSLVTRMTSDTFVLMQFAEMSLRLGLVTPMVMIFSVVMILITSPSLAWLVA
VAMPLLVGVILYVAIKTKPLSERQQTMLDKINQYVRENLTGLRVVRAFARENFQSQKFQVANQRYTDTSTGLFKLTGLTE
PLFVQIIIAMIVAIVWFALDPLQRGAIKIGDLVAFIEYSFHALFSFLLFANLFTMYPRMVVSSHRIREVMDMPISINPNT
EGVTDTKLKGHLEFDNVTFAYPGETESPVLHDISFKAKPGETIAFIGSTGSGKSSLVNLIPCFYDVTLGKILVDGVDVRD
YNLKSLRQKIGFIPQKALLFTGTIGENLKYGKADATIDDLRQAVDISQAKEFIESHQEAFETHLAEGGSNLSGGQKQRLS
IARAVVKDPDLYIFDDSFSALDYKTDATLRARLKEVTGDSTVLIVAQRVGTIMDADQIIVLDEGEIVGRGTHTQLIENNA
IYREIAESQLKNQNLSEGE

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=49103 MSA_RS07075 WP_016480964.1 1339002..1340741(-) (rcrP) [Streptococcus agalactiae ILRI005]
ATGGCATATATTTGGTCTTATTTGAAAAGGTACCCAAATTGGTTATGGCTTGATTTACTAGGAGCTATGCTTTTTGTGAC
GGTTATCCTAGGAATGCCCACAGCCTTAGCGGGTATGATTGATAATGGCGTTACAAAAGGTGATCGGACTGGAGTTTATC
TGTGGACGTTCATCATGTTTATATTTGTTGTACTAGGTATTATTGGGCGTATTACGATGGCTTACGCATCTAGTCGCTTA
ACGACAACAATGATTAGAGATATGCGTAATGATATGTATGCTAAGCTTCAAGAATACTCCCATCATGAATATGAACAGAT
AGGTGTATCTTCGCTAGTGACACGTATGACAAGCGATACTTTTGTTTTGATGCAATTTGCTGAAATGTCTTTACGTTTAG
GCCTAGTAACTCCTATGGTAATGATTTTTAGCGTGGTTATGATACTAATTACGAGTCCATCTTTGGCTTGGCTTGTAGCG
GTTGCGATGCCTCTTTTGGTAGGAGTTATTTTATATGTAGCTATAAAAACAAAACCTTTATCTGAAAGACAACAGACTAT
GCTTGATAAAATCAATCAATATGTTCGTGAAAATTTAACAGGGTTACGCGTTGTTAGGGCCTTTGCAAGAGAGAATTTTC
AATCACAAAAATTTCAAGTCGCTAACCAACGTTACACAGATACTTCAACTGGTCTTTTTAAATTAACAGGGCTAACAGAA
CCACTTTTCGTTCAAATTATTATTGCAATGATTGTGGCTATCGTTTGGTTTGCTTTGGATCCCTTACAAAGAGGTGCTAT
TAAAATAGGGGATTTAGTTGCTTTTATCGAATATAGCTTCCATGCTCTCTTTTCATTTTTGCTATTTGCCAATCTTTTTA
CTATGTATCCTCGTATGGTGGTATCTAGCCATCGTATTAGAGAGGTGATGGATATGCCAATCTCTATTAATCCTAATACC
GAAGGTGTTACGGATACGAAACTCAAAGGGCATTTAGAATTTGATAATGTAACATTCGCTTATCCAGGAGAAACAGAGAG
TCCCGTTTTGCATGATATTTCTTTTAAAGCTAAGCCTGGAGAAACAATTGCTTTTATTGGTTCAACAGGTTCAGGAAAAT
CTTCTCTTGTTAATTTGATTCCATGTTTTTATGATGTGACACTTGGAAAAATCTTAGTAGATGGAGTTGATGTAAGAGAT
TATAACCTTAAATCACTTCGCCAAAAGATTGGATTTATCCCCCAAAAAGCTCTTTTATTTACAGGGACAATAGGAGAGAA
TTTAAAATATGGAAAAGCTGATGCTACTATTGATGATCTTAGACAAGCGGTTGATATTTCTCAAGCTAAAGAGTTTATTG
AGAGTCACCAAGAAGCCTTTGAAACGCATTTAGCTGAAGGTGGGAGCAATCTTTCTGGGGGTCAAAAACAACGGTTATCT
ATTGCTAGGGCTGTTGTTAAAGATCCAGATTTATATATTTTTGATGATTCATTTTCTGCTCTCGATTATAAGACAGATGC
TACTTTAAGAGCGCGTCTAAAAGAAGTAACCGGTGATTCTACAGTTTTGATAGTTGCTCAAAGGGTGGGTACGATTATGG
ATGCTGATCAGATTATTGTCCTTGATGAAGGCGAAATTGTCGGTCGTGGTACCCACACTCAATTAATAGAAAATAATGCT
ATTTATCGTGAAATCGCTGAGTCACAACTGAAGAACCAAAACTTATCAGAAGGAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(30-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.828

94.301

0.366

Multiple sequence alignment