Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   MSA_RS04035 Genome accession   NC_021486
Coordinates   704577..705362 (+) Length   261 a.a.
NCBI ID   WP_000825437.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 699577..710362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS04010 (MSA_8250) - 699834..700685 (+) 852 WP_016480590.1 ABC transporter permease -
  MSA_RS04015 (MSA_8260) - 700695..701381 (+) 687 WP_016480591.1 ABC transporter permease -
  MSA_RS04020 (MSA_8270) - 701619..702047 (+) 429 WP_158458000.1 FtsX-like permease family protein -
  MSA_RS04025 (MSA_8280) - 702144..702815 (+) 672 WP_016480593.1 ABC transporter ATP-binding protein -
  MSA_RS04030 (MSA_8290) - 702871..704316 (-) 1446 WP_016480594.1 FAD/NAD(P)-binding protein -
  MSA_RS04035 (MSA_8300) endA 704577..705362 (+) 786 WP_000825437.1 DNA/RNA non-specific endonuclease Machinery gene
  MSA_RS04040 (MSA_8310) - 705440..706078 (-) 639 WP_000478529.1 VTT domain-containing protein -
  MSA_RS04045 (MSA_8320) - 706295..706951 (+) 657 WP_016480595.1 ATP-binding cassette domain-containing protein -
  MSA_RS04050 (MSA_8330) fetB 706948..707721 (+) 774 WP_000011926.1 iron export ABC transporter permease subunit FetB -
  MSA_RS04055 (MSA_8340) - 707885..708703 (+) 819 WP_016480596.1 hypothetical protein -
  MSA_RS04060 (MSA_8350) - 708740..709624 (-) 885 WP_000354839.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29408.82 Da        Isoelectric Point: 8.9989

>NTDB_id=49070 MSA_RS04035 WP_000825437.1 704577..705362(+) (endA) [Streptococcus agalactiae ILRI005]
MKRLHKLFITVIATLGMLGVMTFGLPTQPQNVTPIVHADVNSSVDTSQEFQNNLKNAIGNLPFQYVNGIYELNNNQTNLN
ADVNVKAYVQNTIDNQQRPSTANAMLDRTIRQYQNRRDTTLPDANWKPLGWHQVATNDHYGHAVDKGHLIAYALAGNFKG
WDASVSNPQNVVTQTAHSNQSNQKINRGQNYYESLVRKAVDQNKRVRYRVTPLYRNDTDLVPFAMHLEAKSQDGTLEFNV
AIPNTQASYTMDYATGEITLN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=49070 MSA_RS04035 WP_000825437.1 704577..705362(+) (endA) [Streptococcus agalactiae ILRI005]
ATGAAAAGATTACATAAACTGTTTATAACCGTAATTGCTACATTAGGTATGTTGGGGGTAATGACCTTTGGTCTTCCAAC
GCAGCCGCAAAACGTAACACCGATAGTACATGCTGATGTCAATTCATCTGTTGATACGAGCCAGGAATTTCAAAATAATT
TAAAAAATGCTATTGGTAACCTACCATTTCAATATGTTAATGGTATTTATGAATTAAATAATAATCAAACAAATTTAAAT
GCTGATGTCAATGTTAAAGCGTATGTTCAAAATACAATTGACAATCAACAAAGACCATCAACTGCTAATGCAATGCTTGA
TAGAACCATTCGTCAATATCAAAATCGCAGAGATACCACTCTTCCCGATGCAAATTGGAAACCATTAGGTTGGCATCAAG
TAGCCACTAATGACCATTATGGGCATGCAGTCGACAAGGGGCATTTAATTGCCTATGCTTTAGCTGGAAATTTCAAAGGT
TGGGATGCTTCCGTGTCAAATCCTCAAAATGTTGTCACACAAACAGCTCATTCCAACCAATCAAATCAAAAAATCAATCG
TGGACAAAATTATTATGAAAGCTTAGTTCGTAAGGCGGTTGACCAAAACAAACGTGTTCGTTACCGTGTAACTCCATTGT
ACCGTAATGATACTGATTTAGTTCCATTTGCAATGCACCTAGAAGCTAAATCACAAGATGGCACATTAGAATTTAATGTT
GCTATTCCAAACACACAAGCATCATATACTATGGATTATGCAACAGGAGAAATAACACTAAATTAA

Domains

Predicted by InterProScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(77-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

52.02

75.862

0.395
  endA Streptococcus pneumoniae D39

52.02

75.862

0.395
  endA Streptococcus pneumoniae R6

52.02

75.862

0.395
  endA Streptococcus pneumoniae TIGR4

52.02

75.862

0.395

Multiple sequence alignment