Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IHV80_RS00720 Genome accession   NZ_CP062500
Coordinates   156841..157554 (-) Length   237 a.a.
NCBI ID   WP_192889744.1    Uniprot ID   -
Organism   Vibrio bathopelagicus strain Sal10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151841..162554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS00695 - 152934..153422 (+) 489 WP_192889740.1 type II secretion system protein M -
  IHV80_RS00700 - 153424..154203 (+) 780 WP_192889741.1 type II secretion system protein N -
  IHV80_RS00705 cysQ 154403..155230 (-) 828 WP_192889742.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  IHV80_RS00710 nudE 155267..155818 (-) 552 WP_192889743.1 ADP compounds hydrolase NudE -
  IHV80_RS00715 nfuA 156147..156731 (-) 585 WP_009848013.1 Fe-S biogenesis protein NfuA -
  IHV80_RS00720 comF 156841..157554 (-) 714 WP_192889744.1 ComF family protein Machinery gene
  IHV80_RS00725 bioH 157648..158424 (+) 777 WP_192889745.1 pimeloyl-ACP methyl ester esterase BioH -
  IHV80_RS00730 - 158600..159073 (+) 474 WP_017107878.1 hypothetical protein -
  IHV80_RS00735 - 159297..161627 (-) 2331 WP_192889746.1 Tex family protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27324.55 Da        Isoelectric Point: 8.4865

>NTDB_id=490489 IHV80_RS00720 WP_192889744.1 156841..157554(-) (comF) [Vibrio bathopelagicus strain Sal10]
MLSDWLQKHTPRLVTPQCHLCKLDKSPHDDHPRWCNDCLNLFEPVPRCQRCGLKTLTTVEQCGQCLSKPPPWHRLYCVGD
YTFPIARYIQQMKYSDKFWFTRDLSKLLASRIDHPAPLITSVPLHWTRYIQRSFNQSQLLANYTAQELGVKSDVLFRRTR
ATLSQQGLTKSIRLSNLNGAFTLVPRDFEATDYPHIAIIDDVVTTGSTVYQLCQLLLEVGVKRIDIYCICRTPEPSG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=490489 IHV80_RS00720 WP_192889744.1 156841..157554(-) (comF) [Vibrio bathopelagicus strain Sal10]
ATGTTATCTGATTGGCTACAAAAACACACACCACGGCTGGTCACACCTCAATGTCACCTGTGTAAATTGGACAAATCCCC
TCATGATGATCACCCGCGATGGTGTAATGATTGTCTTAATCTCTTCGAGCCAGTGCCGCGCTGCCAGCGGTGTGGCTTAA
AAACCCTCACTACCGTCGAGCAATGTGGTCAGTGTTTATCTAAACCTCCACCATGGCATCGTCTCTATTGTGTGGGCGAT
TACACCTTCCCAATCGCGCGCTATATCCAGCAGATGAAATATTCCGATAAGTTTTGGTTTACTCGCGATCTGTCGAAGTT
GTTAGCCTCACGCATTGACCATCCAGCCCCGCTGATTACCAGTGTCCCTTTACATTGGACTCGATACATTCAACGCAGCT
TTAACCAAAGCCAATTATTGGCAAACTACACCGCTCAAGAGTTAGGGGTGAAAAGTGACGTATTGTTTCGGCGAACTCGC
GCCACGCTTTCTCAACAAGGGTTAACCAAGTCTATAAGGCTGAGTAACCTAAATGGTGCTTTCACGCTTGTCCCTCGCGA
CTTTGAAGCGACTGATTATCCTCACATTGCGATAATTGATGATGTTGTAACCACAGGAAGTACAGTGTATCAATTATGCC
AATTACTACTTGAAGTGGGCGTGAAAAGGATTGATATTTACTGTATCTGCCGCACTCCTGAGCCCTCTGGATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.23

100

0.557
  comF Vibrio campbellii strain DS40M4

48.361

100

0.498