Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ILQ00_RS04070 Genome accession   NZ_CP062473
Coordinates   853425..855188 (-) Length   587 a.a.
NCBI ID   WP_057909627.1    Uniprot ID   A0A0R1YUB9
Organism   Lentilactobacillus parabuchneri strain KEM     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 851674..866137 853425..855188 within 0


Gene organization within MGE regions


Location: 851674..866137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ILQ00_RS04065 (ILQ00_04065) rcrQ 851674..853425 (-) 1752 WP_057909626.1 ABC transporter ATP-binding protein Regulator
  ILQ00_RS04070 (ILQ00_04070) rcrP 853425..855188 (-) 1764 WP_057909627.1 ABC transporter ATP-binding protein Regulator
  ILQ00_RS04075 (ILQ00_04075) - 855389..856084 (-) 696 WP_057909628.1 glycerophosphodiester phosphodiesterase family protein -
  ILQ00_RS04080 (ILQ00_04080) - 856160..857524 (-) 1365 WP_057909629.1 ABC transporter substrate-binding protein -
  ILQ00_RS04085 (ILQ00_04085) - 857521..858351 (-) 831 WP_057909630.1 carbohydrate ABC transporter permease -
  ILQ00_RS04090 (ILQ00_04090) - 858351..859313 (-) 963 WP_057909631.1 carbohydrate ABC transporter permease -
  ILQ00_RS04095 (ILQ00_04095) - 859306..860394 (-) 1089 WP_057909632.1 ABC transporter ATP-binding protein -
  ILQ00_RS04100 (ILQ00_04100) - 860822..861334 (-) 513 WP_057909633.1 helix-turn-helix domain-containing protein -
  ILQ00_RS04105 (ILQ00_04105) - 861855..862277 (-) 423 WP_057909634.1 hypothetical protein -
  ILQ00_RS04110 (ILQ00_04110) - 862618..865401 (+) 2784 WP_192851776.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64663.91 Da        Isoelectric Point: 9.9175

>NTDB_id=490359 ILQ00_RS04070 WP_057909627.1 853425..855188(-) (rcrP) [Lentilactobacillus parabuchneri strain KEM]
MFKLLKRLNKREYAMIAISTIFIAIQVWLELKIPDYMTQITTALGTSGSTTTDILDPGLKMLALSILSMCSAIIVGYFAA
HVAAGFSARIRGKVFNQVMDYSTEDINQFSIPSLLTRSTNDITQIQTFIAMGMQVIIKAPITAVWAITKIANKGWQWTLA
TGIAVALLVIALTIILSLVQPKFKMVQKLTDKLNQTTRENLSGLRVVHAFNAEQFQNQKFDKANHELTGANLFANRVLAL
MNPVMTLISNGLTLAVYAIGAVLIENAAMGAGRLTLFSNMIVFSSYAMQVILAFLLLSIIFVILPRVTVSAGRINQVLSV
KPNINYPDKTQQTPTSMGTVEFRDVSFKFKDAEASAIAHLSFKAEPGQTVAFIGSTGSGKSTVLNLLSHQYDITSGQILV
DGVDIRDYSESDLNNRLGYIPQKAVLFSGTIRSNINFGKTNQTSPMSDQQIIDALKTAQAWEFVSSNEKKLDAPVAQHGD
NFSGGQKQRLAIARAIARNPEVLMFDDSFSALDYATDRRLRDALKQNRRRTTKLIVAQRISTIMDADEIVVLDKGKVVGQ
GTHQQLLKNNDVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=490359 ILQ00_RS04070 WP_057909627.1 853425..855188(-) (rcrP) [Lentilactobacillus parabuchneri strain KEM]
ATGTTTAAACTACTAAAACGACTTAATAAGCGAGAATATGCCATGATCGCAATCAGTACGATATTCATCGCCATTCAAGT
ATGGCTTGAATTGAAAATTCCTGATTATATGACCCAAATTACCACTGCTTTGGGAACTTCAGGAAGTACGACAACGGATA
TTTTGGATCCTGGATTAAAAATGTTGGCTCTTTCTATTCTGAGTATGTGTTCGGCAATTATTGTCGGTTACTTTGCCGCA
CACGTTGCTGCTGGATTTAGTGCCAGAATTCGGGGCAAAGTCTTTAACCAAGTGATGGATTACTCAACTGAAGATATTAA
TCAGTTCTCAATTCCAAGCTTGTTGACCCGGTCAACAAATGATATTACTCAGATTCAAACATTCATTGCAATGGGGATGC
AAGTTATCATTAAAGCACCTATCACGGCAGTATGGGCCATCACGAAGATTGCAAATAAAGGATGGCAATGGACTTTAGCC
ACAGGAATCGCTGTAGCACTTTTAGTAATTGCGTTGACGATTATCCTATCTTTGGTACAGCCAAAATTTAAGATGGTTCA
GAAGTTAACCGATAAATTAAATCAAACAACTCGTGAAAACTTAAGTGGACTGCGGGTTGTGCATGCTTTCAATGCTGAAC
AATTCCAAAATCAAAAATTTGATAAAGCTAATCATGAACTGACCGGAGCTAACTTATTTGCCAACCGGGTTCTCGCTTTG
ATGAACCCAGTAATGACGTTAATCTCTAATGGTCTTACCTTGGCAGTCTACGCAATTGGTGCGGTATTAATTGAAAATGC
AGCAATGGGTGCTGGACGGCTAACACTGTTTAGCAATATGATCGTTTTCTCATCGTATGCGATGCAGGTTATTTTAGCGT
TCCTGCTGCTATCAATTATTTTTGTCATTCTGCCCCGGGTGACAGTTTCAGCTGGCCGAATCAATCAGGTTTTGAGTGTT
AAACCAAACATTAATTATCCGGACAAAACCCAGCAGACGCCCACATCCATGGGAACAGTTGAATTTAGGGATGTTTCCTT
TAAATTTAAGGATGCCGAAGCAAGTGCCATTGCACATTTGTCATTCAAGGCTGAACCAGGACAAACAGTCGCTTTCATCG
GATCGACCGGTAGTGGGAAAAGTACCGTTTTGAACTTGCTTTCACATCAATATGACATTACCAGCGGACAAATATTAGTC
GATGGCGTGGACATTCGTGACTACTCTGAATCGGATTTGAATAATCGTTTAGGCTATATTCCACAGAAAGCTGTTCTATT
TAGTGGAACGATTCGTTCAAATATTAATTTTGGTAAAACCAATCAAACAAGTCCAATGAGTGATCAACAGATTATCGATG
CTCTTAAGACAGCTCAAGCATGGGAATTTGTTAGTTCGAACGAAAAGAAGCTGGATGCACCGGTTGCGCAGCACGGGGAT
AACTTCTCTGGCGGCCAAAAACAACGATTGGCGATTGCACGGGCAATTGCGCGAAACCCTGAAGTATTGATGTTTGATGA
TTCCTTTTCGGCTTTGGATTATGCAACTGACCGGAGACTTCGGGATGCCTTGAAACAAAATCGCCGTCGCACAACGAAAC
TCATTGTGGCACAGCGGATTAGTACAATTATGGATGCAGATGAGATTGTGGTACTAGATAAAGGTAAAGTTGTGGGTCAA
GGAACCCATCAACAATTATTGAAAAATAATGACGTGTATCAAGAAATCGCATACTCACAGCTGTCAAAGGAGGAATTGGC
GTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-282)

ABC transporter (ABC_tran)

(359-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1YUB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.784

100

0.578