Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KFU63_RS02140 Genome accession   NZ_CP074042
Coordinates   456121..456588 (-) Length   155 a.a.
NCBI ID   WP_025653356.1    Uniprot ID   -
Organism   Escherichia coli strain PI6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451121..461588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU63_RS02115 (KFU63_02080) rpsG 451262..451732 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  KFU63_RS02120 (KFU63_02085) fusA 451829..453943 (+) 2115 WP_000124700.1 elongation factor G -
  KFU63_RS02125 (KFU63_02090) tuf 454014..455198 (+) 1185 WP_000031783.1 elongation factor Tu -
  KFU63_RS02130 (KFU63_02095) bfd 455381..455575 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  KFU63_RS02135 (KFU63_02100) bfr 455648..456124 (+) 477 WP_000675515.1 bacterioferritin -
  KFU63_RS02140 (KFU63_02105) pilD 456121..456588 (-) 468 WP_025653356.1 A24 family peptidase Machinery gene
  KFU63_RS02145 (KFU63_02110) rpsJ 456967..457278 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  KFU63_RS02150 (KFU63_02115) rplC 457311..457940 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  KFU63_RS02155 (KFU63_02120) rplD 457951..458556 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  KFU63_RS02160 (KFU63_02125) rplW 458553..458855 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  KFU63_RS02165 (KFU63_02130) rplB 458873..459694 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  KFU63_RS02170 (KFU63_02135) rpsS 459711..459989 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  KFU63_RS02175 (KFU63_02140) rplV 460004..460336 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  KFU63_RS02180 (KFU63_02145) rpsC 460354..461055 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  KFU63_RS02185 (KFU63_02150) rplP 461068..461478 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16921.05 Da        Isoelectric Point: 8.1296

>NTDB_id=490342 KFU63_RS02140 WP_025653356.1 456121..456588(-) (pilD) [Escherichia coli strain PI6]
MDANLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWAFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=490342 KFU63_RS02140 WP_025653356.1 456121..456588(-) (pilD) [Escherichia coli strain PI6]
ATGGACGCTAACCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGGCCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTAGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361