Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   STH8232_RS09195 Genome accession   NC_017581
Coordinates   1772531..1773487 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus JIM 8232     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1767531..1778487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH8232_RS09160 (STH8232_2134) proC 1768091..1768861 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  STH8232_RS09165 (STH8232_2135) - 1768891..1769553 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  STH8232_RS09170 (STH8232_2136) - 1769650..1770093 (-) 444 WP_011681680.1 hypothetical protein -
  STH8232_RS12040 (STH8232_2137) - 1770167..1770505 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  STH8232_RS12045 (STH8232_2138) - 1770549..1770824 (-) 276 WP_011681681.1 hypothetical protein -
  STH8232_RS09185 (STH8232_2139) - 1770836..1771033 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STH8232_RS09190 (STH8232_2140) - 1771282..1772475 (-) 1194 WP_014622001.1 acetate kinase -
  STH8232_RS09195 (STH8232_2141) comYH 1772531..1773487 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STH8232_RS09200 (STH8232_2142) comGG 1773532..1773849 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  STH8232_RS09205 (STH8232_2143) comYF 1773827..1774264 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  STH8232_RS09210 (STH8232_2144) comGE 1774248..1774541 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  STH8232_RS09215 (STH8232_2145) comYD 1774513..1774941 (-) 429 WP_257608452.1 competence type IV pilus minor pilin ComGD Machinery gene
  STH8232_RS09220 (STH8232_2146) comYC 1774901..1775227 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STH8232_RS09225 (STH8232_2147) comYB 1775224..1776324 (-) 1101 WP_014622004.1 competence type IV pilus assembly protein ComGB Machinery gene
  STH8232_RS09230 (STH8232_2148) comYA 1776206..1777147 (-) 942 WP_014622005.1 competence type IV pilus ATPase ComGA Machinery gene
  STH8232_RS09235 (STH8232_2149) - 1777228..1777590 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=49017 STH8232_RS09195 WP_011226622.1 1772531..1773487(-) (comYH) [Streptococcus thermophilus JIM 8232]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=49017 STH8232_RS09195 WP_011226622.1 1772531..1773487(-) (comYH) [Streptococcus thermophilus JIM 8232]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment