Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   STH8232_RS07180 Genome accession   NC_017581
Coordinates   1389412..1390341 (-) Length   309 a.a.
NCBI ID   WP_014621801.1    Uniprot ID   -
Organism   Streptococcus thermophilus JIM 8232     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384412..1395341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH8232_RS07155 (STH8232_1659) - 1385699..1386514 (-) 816 WP_014621798.1 Cof-type HAD-IIB family hydrolase -
  STH8232_RS07160 (STH8232_1660) - 1386516..1387301 (-) 786 WP_014621799.1 HAD-IIB family hydrolase -
  STH8232_RS07165 (STH8232_1661) - 1387485..1387862 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  STH8232_RS07170 (STH8232_1662) - 1387867..1388565 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  STH8232_RS07175 (STH8232_1663) - 1388577..1389362 (+) 786 WP_014621800.1 hypothetical protein -
  STH8232_RS07180 (STH8232_1664) amiF 1389412..1390341 (-) 930 WP_014621801.1 ATP-binding cassette domain-containing protein Regulator
  STH8232_RS07185 (STH8232_1665) amiE 1390334..1391419 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  STH8232_RS07190 (STH8232_1666) amiD 1391429..1392355 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  STH8232_RS07195 (STH8232_1667) amiC 1392355..1393848 (-) 1494 WP_014608541.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35170.30 Da        Isoelectric Point: 6.7823

>NTDB_id=49002 STH8232_RS07180 WP_014621801.1 1389412..1390341(-) (amiF) [Streptococcus thermophilus JIM 8232]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHNYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=49002 STH8232_RS07180 WP_014621801.1 1389412..1390341(-) (amiF) [Streptococcus thermophilus JIM 8232]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGGAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCACGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACAACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus thermophilus LMD-9

99.353

100

0.994
  amiF Streptococcus salivarius strain HSISS4

97.735

100

0.977

Multiple sequence alignment