Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SGGB_RS06635 Genome accession   NC_017576
Coordinates   1324007..1325779 (-) Length   590 a.a.
NCBI ID   WP_012962068.1    Uniprot ID   A0AA36JZ95
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1320001..1344376 1324007..1325779 within 0


Gene organization within MGE regions


Location: 1320001..1344376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS06610 (SGGB_1277) - 1320001..1320774 (-) 774 WP_009854387.1 ABC transporter ATP-binding protein -
  SGGB_RS06615 (SGGB_1278) - 1320787..1321707 (-) 921 WP_012962066.1 glycine betaine ABC transporter substrate-binding protein -
  SGGB_RS06620 (SGGB_1279) - 1321697..1322332 (-) 636 WP_009854389.1 ABC transporter permease -
  SGGB_RS06625 (SGGB_1280) - 1322322..1322774 (-) 453 WP_009854390.1 MarR family winged helix-turn-helix transcriptional regulator -
  SGGB_RS06630 (SGGB_1281) - 1322764..1323741 (-) 978 WP_012962067.1 alcohol dehydrogenase catalytic domain-containing protein -
  SGGB_RS06635 (SGGB_1282) rcrQ 1324007..1325779 (-) 1773 WP_012962068.1 ABC transporter ATP-binding protein Regulator
  SGGB_RS06640 (SGGB_1283) rcrP 1325769..1327583 (-) 1815 WP_012962069.1 ABC transporter ATP-binding protein Regulator
  SGGB_RS06645 (SGGB_1284) rcrR 1327587..1328027 (-) 441 WP_012962070.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SGGB_RS06650 (SGGB_1285) - 1328202..1328612 (-) 411 WP_012962071.1 peptide deformylase -
  SGGB_RS06655 (SGGB_1286) - 1328609..1329118 (-) 510 WP_012962072.1 GNAT family N-acetyltransferase -
  SGGB_RS06660 (SGGB_1287) gdhA 1329385..1330734 (-) 1350 WP_012962073.1 NADP-specific glutamate dehydrogenase -
  SGGB_RS06665 (SGGB_1288) - 1330981..1331478 (+) 498 WP_009854399.1 DUF308 domain-containing protein -
  SGGB_RS12085 (SGGB_1289) queF 1331535..1332026 (-) 492 WP_012962074.1 preQ(1) synthase -
  SGGB_RS12090 (SGGB_1290) queE 1332039..1332752 (-) 714 WP_014620163.1 7-carboxy-7-deazaguanine synthase QueE -
  SGGB_RS06680 (SGGB_1291) queD 1332745..1333191 (-) 447 WP_012962076.1 6-carboxytetrahydropterin synthase QueD -
  SGGB_RS06685 (SGGB_1292) queC 1333191..1333844 (-) 654 WP_012962077.1 7-cyano-7-deazaguanine synthase QueC -
  SGGB_RS06690 (SGGB_1293) - 1334085..1335854 (-) 1770 WP_012962078.1 ABC transporter ATP-binding protein -
  SGGB_RS06695 (SGGB_1294) - 1335857..1337596 (-) 1740 WP_012962079.1 ABC transporter ATP-binding protein -
  SGGB_RS06700 (SGGB_1295) - 1337674..1339545 (-) 1872 WP_012962080.1 ABC-F family ATP-binding cassette domain-containing protein -
  SGGB_RS06705 (SGGB_1296) - 1339542..1340747 (-) 1206 WP_012962081.1 CCA tRNA nucleotidyltransferase -
  SGGB_RS06710 (SGGB_1297) dapB 1340744..1341511 (-) 768 WP_009854408.1 4-hydroxy-tetrahydrodipicolinate reductase -
  SGGB_RS06715 (SGGB_1298) - 1341531..1342379 (-) 849 WP_012962082.1 DegV family protein -
  SGGB_RS06720 (SGGB_1299) - 1342379..1342759 (-) 381 WP_009854410.1 DUF1149 family protein -
  SGGB_RS06725 (SGGB_1300) - 1342888..1343661 (-) 774 WP_009854411.1 TMEM175 family protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65199.22 Da        Isoelectric Point: 5.0380

>NTDB_id=48919 SGGB_RS06635 WP_012962068.1 1324007..1325779(-) (rcrQ) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MENKKKTSFYGRMKPYIKGFQLPFLLAVIGAIVSATVTVIGPDKLKEITNTITKGLTPTATGMIPGIDLDKVGEIALTLA
ILYVISAVVGYIQSFTVATIVQRFSQRLRKAIQTKIDKVPLNYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSTML
LIGSIFMMFHSNVSMALTAIGSVLIGFVLVMVIMGSSQPLFKRQQNNLAAINGYVEEIYSGHNVVTSYNAAGETSETFKK
LNTNLYKSMWQSQFLSGIMMPLMIFVGNFGYVMVCVVGAVKVINGDITMGDVVAFMTYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEDEMEDESDKERQLSDVNGEVAFDNVFFGYSKDKTIIHDFSAVAKTGQKVAIVGPTGAGKTTIVNLLMK
FYEIDKGQITIDGVDTRLMTREEVHDQFSMVLQDTWLFEGTIKENLIYNQENITDEQVIAAAKAVGVHHFIMTLPKGYDT
YLDDSVTLSIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDDLMQQGGFYADLYNSQFEAA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=48919 SGGB_RS06635 WP_012962068.1 1324007..1325779(-) (rcrQ) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGGAAAATAAGAAAAAAACATCTTTCTATGGCAGAATGAAGCCCTACATTAAAGGTTTCCAGCTTCCATTTCTTCTTGC
AGTGATTGGAGCAATTGTTTCTGCGACGGTTACGGTTATTGGACCTGATAAATTAAAAGAAATCACCAATACAATCACCA
AAGGTTTGACACCAACGGCGACTGGTATGATTCCAGGAATCGACTTGGATAAAGTTGGTGAAATTGCATTAACTTTAGCA
ATTTTATACGTTATTTCAGCAGTAGTTGGTTATATTCAAAGCTTTACCGTAGCGACTATCGTTCAACGTTTTTCACAACG
TTTACGTAAAGCTATTCAGACCAAAATTGACAAGGTTCCATTGAATTACTTTGATAGTCATTCGCAAGGGGACACCCTTT
CTCGTGTGACAAATGACGTTGACTTGCTTGGTCAATCGCTTAACCAAAGTTTGGGAACTTTGGTGACATCAACCATGTTA
TTGATTGGTTCAATTTTCATGATGTTCCATTCAAATGTCAGCATGGCTTTAACAGCGATTGGGTCTGTTCTGATTGGTTT
TGTTTTGGTTATGGTTATCATGGGCTCATCACAACCATTGTTCAAACGCCAACAAAATAACTTGGCTGCGATTAACGGTT
ATGTTGAAGAAATTTACTCTGGTCATAATGTGGTAACAAGTTATAACGCTGCTGGTGAAACAAGCGAAACCTTTAAAAAA
TTAAACACCAATCTTTATAAATCAATGTGGCAATCACAGTTCTTGTCAGGTATTATGATGCCGCTTATGATTTTCGTTGG
GAACTTTGGGTATGTTATGGTCTGTGTGGTTGGTGCCGTTAAAGTTATCAATGGTGATATTACCATGGGTGACGTGGTTG
CCTTTATGACTTATGTTCGTATCTTCTCACAACCATTGTCACAAATTGCGCAAGCTTTCACACAAATGCAATCAGCAACA
GCCGCCATGAGTCGTGTCTTTGAATTCCTTGAAGAAGATGAAATGGAAGACGAGTCTGACAAGGAACGTCAACTTAGTGA
TGTTAATGGTGAAGTTGCCTTTGATAATGTTTTCTTTGGTTATTCTAAGGATAAAACAATTATCCATGATTTCTCCGCTG
TGGCGAAAACTGGTCAGAAAGTTGCCATTGTTGGACCAACAGGCGCTGGTAAAACAACCATTGTTAACCTGCTCATGAAA
TTCTATGAAATCGATAAAGGTCAAATCACTATTGATGGTGTGGATACACGTTTGATGACACGTGAAGAAGTGCATGACCA
ATTCTCAATGGTGCTTCAAGATACGTGGTTGTTTGAAGGAACAATCAAAGAAAACTTGATTTACAATCAAGAAAATATTA
CAGACGAACAAGTTATTGCAGCGGCTAAGGCTGTTGGTGTTCATCACTTTATCATGACACTTCCAAAAGGTTATGACACT
TATCTTGATGATTCTGTAACGCTTTCAATTGGTCAAAAACAACTCTTGACGATTGCGCGTGCTCTTTTGAAAGATTCACC
GCTCCTTATTTTGGACGAAGCAACGTCATCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGTCGTACATCATTTGTTATTGCTCACCGTTTGTCAACGATTAGAAACGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATCATCGAACAAGGCAATCACGATGATTTGATGCAACAAGGTGGCTTCTATGCAGACCTTTACAACTCACAATT
TGAAGCAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

73.765

99.492

0.734

Multiple sequence alignment