NTDB

Overview

Name	comGB	Type	Machinery gene
Locus tag	IF714_RS07330	Genome accession	NZ_CP062364
Coordinates	1550712..1551782 (-)	Length	356 a.a.
NCBI ID	WP_000776407.1	Uniprot ID	-
Organism	Staphylococcus aureus strain NAS_AN_130
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1545712..1556782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF714_RS07290 (IF714_07275)	gcvPA	1545889..1547235 (-)	1347	WP_000019687.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-
IF714_RS07295 (IF714_07280)	gcvT	1547255..1548346 (-)	1092	WP_000093349.1	glycine cleavage system aminomethyltransferase GcvT	-
IF714_RS07300 (IF714_07285)	-	1548505..1549029 (-)	525	WP_001015116.1	shikimate kinase	-
IF714_RS07305 (IF714_07290)	-	1549019..1549165 (-)	147	WP_001789879.1	hypothetical protein	-
IF714_RS07310 (IF714_07295)	comGF	1549262..1549759 (-)	498	WP_001838632.1	competence type IV pilus minor pilin ComGF	Machinery gene
IF714_RS07315 (IF714_07300)	comGE	1549677..1549976 (-)	300	WP_000844413.1	hypothetical protein	Machinery gene
IF714_RS07320 (IF714_07305)	comGD	1549963..1550409 (-)	447	WP_001796473.1	competence type IV pilus minor pilin ComGD	Machinery gene
IF714_RS07325 (IF714_07310)	comGC	1550387..1550698 (-)	312	WP_000472256.1	competence type IV pilus major pilin ComGC	Machinery gene
IF714_RS07330 (IF714_07315)	comGB	1550712..1551782 (-)	1071	WP_000776407.1	competence type IV pilus assembly protein ComGB	Machinery gene
IF714_RS07335 (IF714_07320)	comGA	1551754..1552728 (-)	975	WP_000697218.1	competence type IV pilus ATPase ComGA	Machinery gene
IF714_RS07340 (IF714_07325)	-	1552780..1553403 (-)	624	WP_001223008.1	MBL fold metallo-hydrolase	-
IF714_RS07345 (IF714_07330)	-	1553400..1553729 (-)	330	WP_001018871.1	MTH1187 family thiamine-binding protein	-
IF714_RS07350 (IF714_07335)	-	1553729..1554715 (-)	987	WP_000161315.1	ROK family glucokinase	-
IF714_RS07355 (IF714_07340)	-	1554712..1554915 (-)	204	WP_000087561.1	YqgQ family protein	-
IF714_RS07360 (IF714_07345)	-	1554896..1556359 (-)	1464	WP_001017869.1	rhomboid family intramembrane serine protease	-

Sequence

Protein

Download Length: 356 a.a. Molecular weight: 41465.90 Da Isoelectric Point: 10.1030

                                >NTDB_id=488534 IF714_RS07330 WP_000776407.1 1550712..1551782(-) (comGB) [Staphylococcus aureus strain NAS_AN_130]

MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMAYKNKQLGTTILSEISNGAPCNQILSLIG

YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS

SFQKTLSFFITSLPTIIVVMLIMVSILAIIMKLFYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ

SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK

QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide

Download Length: 1071 bp

                                >NTDB_id=488534 IF714_RS07330 WP_000776407.1 1550712..1551782(-) (comGB) [Staphylococcus aureus strain NAS_AN_130]

GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT

TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGGCATATA

AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAGATATTATCACTGATAGGT

TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA

TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATTTTTA

TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT

TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATGGTATCTATATT

GGCTATTATTATGAAATTATTTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGTTAATAT

CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA

TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA

AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG

AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA

CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC

AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGB	Staphylococcus aureus MW2	98.596	100	0.986
comGB	Staphylococcus aureus N315	98.596	100	0.986

Detailed information NTG0488534