Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K751_RS02755 Genome accession   NC_021218
Coordinates   563415..564590 (-) Length   391 a.a.
NCBI ID   WP_015643005.1    Uniprot ID   -
Organism   Helicobacter pylori UM066     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 558415..569590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K751_RS02720 (K751_08630) - 558740..559054 (+) 315 WP_000867999.1 hypothetical protein -
  K751_RS02725 (K751_05385) - 559032..559808 (+) 777 WP_015643009.1 RNA polymerase sigma factor FliA -
  K751_RS02730 (K751_05380) fliM 559801..560865 (+) 1065 WP_000763605.1 flagellar motor switch protein FliM -
  K751_RS02735 (K751_05375) fliY 560869..561726 (+) 858 WP_015643008.1 flagellar motor switch protein FliY -
  K751_RS02740 (K751_05370) - 561754..562290 (+) 537 WP_015643007.1 YhcH/YjgK/YiaL family protein -
  K751_RS02745 (K751_05365) - 562287..562784 (+) 498 WP_015643006.1 DUF2147 domain-containing protein -
  K751_RS02750 (K751_05360) fur 562804..563256 (-) 453 WP_000824987.1 ferric iron uptake transcriptional regulator -
  K751_RS02755 (K751_05355) rarA 563415..564590 (-) 1176 WP_015643005.1 replication-associated recombination protein A Machinery gene
  K751_RS02760 (K751_05350) - 564587..564958 (-) 372 WP_000332994.1 helix-turn-helix transcriptional regulator -
  K751_RS02765 (K751_05345) - 564968..565834 (-) 867 WP_000045776.1 DnaJ C-terminal domain-containing protein -
  K751_RS02770 (K751_09280) - 566002..567252 (+) 1251 WP_021299606.1 hypothetical protein -
  K751_RS02775 (K751_05330) - 567315..568181 (-) 867 WP_080132326.1 5'-3' exonuclease -
  K751_RS02780 (K751_05320) - 568407..569303 (-) 897 WP_000697547.1 OriC activity response regulator -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43904.52 Da        Isoelectric Point: 7.8251

>NTDB_id=48829 K751_RS02755 WP_015643005.1 563415..564590(-) (rarA) [Helicobacter pylori UM066]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLEHPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLKKSDLDKLCTK
ALTLLKKQIEPSAKTYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVVFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDYIQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=48829 K751_RS02755 WP_015643005.1 563415..564590(-) (rarA) [Helicobacter pylori UM066]
ATGAGCCTGACTTCACTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGCCTGG
CTCAAATCATCGCCCGCATGCTAGAGCACCCCATTCTTTTATTTAATGCGACGGATTTCAAGTTAGAGGATTTACGCCTT
AAACTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAAAAAAAGCGATTTAGACAAGCTTTGCACTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCCTAGCGCTAAAACCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACACTGCAATCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAATCTTACTAGTGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTACTATCTAGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGGT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTAAATTTAGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGCTCGCCCAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTATATTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(168-237)

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.379

100

0.394