Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K750_RS04150 Genome accession   NC_021217
Coordinates   879819..880994 (+) Length   391 a.a.
NCBI ID   WP_015644022.1    Uniprot ID   -
Organism   Helicobacter pylori UM037     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 874819..885994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K750_RS04125 (K750_03705) - 875074..875970 (+) 897 WP_015644026.1 OriC activity response regulator -
  K750_RS04130 (K750_03695) - 876226..877062 (+) 837 WP_015644025.1 5'-3' exonuclease -
  K750_RS04135 (K750_03690) - 877157..878407 (-) 1251 WP_015644024.1 hypothetical protein -
  K750_RS04140 (K750_03685) - 878575..879441 (+) 867 WP_015644023.1 DnaJ C-terminal domain-containing protein -
  K750_RS04145 (K750_03680) - 879451..879822 (+) 372 WP_000332999.1 heat shock protein transcriptional repressor HspR -
  K750_RS04150 (K750_03675) rarA 879819..880994 (+) 1176 WP_015644022.1 replication-associated recombination protein A Machinery gene
  K750_RS04155 (K750_03670) fur 881154..881606 (+) 453 WP_000824996.1 ferric iron uptake transcriptional regulator -
  K750_RS04160 (K750_03665) - 881627..882124 (-) 498 WP_015644021.1 DUF2147 domain-containing protein -
  K750_RS04165 (K750_03660) - 882121..882657 (-) 537 WP_015644020.1 YhcH/YjgK/YiaL family protein -
  K750_RS04170 (K750_03655) fliY 882686..883549 (-) 864 WP_015644019.1 flagellar motor switch protein FliY -
  K750_RS04175 (K750_03650) fliM 883553..884617 (-) 1065 WP_000763564.1 flagellar motor switch protein FliM -
  K750_RS04180 (K750_03645) - 884610..885377 (-) 768 WP_015644018.1 RNA polymerase sigma factor FliA -
  K750_RS04185 (K750_03640) - 885355..885669 (-) 315 WP_001265941.1 hypothetical protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 43822.52 Da        Isoelectric Point: 8.5290

>NTDB_id=48780 K750_RS04150 WP_015644022.1 879819..880994(+) (rarA) [Helicobacter pylori UM037]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARSLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELIPLNKSDLDRLCDK
ALALLKKQIEPDARTYLLNNSAGDARALLNLLDLSAKIENPITLKTLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLFSVKQIGYPEARIILSQCVIYLACSPKSNTAY
KAINQALGCVQKGLLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLNLVSSQGIGFEKTLLEWLDKIRN

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=48780 K750_RS04150 WP_015644022.1 879819..880994(+) (rarA) [Helicobacter pylori UM037]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATTTAATAGGGAAAGACGCTCC
CTTATTTAAAGCCCTACAATCCAAACACTTCCCCCATGCCTTTTTTTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCTCGCTCCCTAGAGCGCCCCATTCTTTTGTTTAATGCGACGGATTTCAAATTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCCGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCTATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAATCCCCTTAAACAAGAGCGATTTAGACAGGCTTTGCGATAAG
GCTTTAGCATTGTTAAAAAAACAAATAGAGCCTGACGCTAGAACTTATCTTTTGAATAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAAATCCTATCACTTTAAAAACCTTGCAATCCTTACGGCCCCATA
GCCTAAATGACGGATCTTATAGCGATGATACGCATTATAACCTCACTAGCGCACTCATTAAATCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATCTATTATCTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCCAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCCCTTAATTTGGCCGCTTCTTGCTTGTTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAGTGCGTGATTTATCTGGCTTGTTCGCCTAAGTCTAACACGGCTTAT
AAAGCGATCAATCAGGCTTTAGGTTGCGTTCAAAAGGGCTTGCTCTACCCTATTCCTAAACACCTGCTGCCTAACGCTAA
AGACTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATCTAGAAAAACCCCTCAATCTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAAATAAGAAATTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(238-389)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(7-117)

AAA C-terminal domain (AAA_assoc_2)

(168-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.864

100

0.399

Multiple sequence alignment