Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Y11_RS12955 | Genome accession | NC_017564 |
| Coordinates | 2788053..2788601 (-) | Length | 182 a.a. |
| NCBI ID | WP_005165221.1 | Uniprot ID | A0A0E1NLP2 |
| Organism | Yersinia enterocolitica subsp. palearctica Y11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Genomic Context
Location: 2783053..2793601
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Y11_RS12935 (Y11_27451) | - | 2783641..2785008 (-) | 1368 | WP_005165212.1 | NCS2 family permease | - |
| Y11_RS12940 (Y11_27461) | - | 2785369..2786040 (-) | 672 | WP_005165214.1 | glutathione S-transferase family protein | - |
| Y11_RS12945 (Y11_27471) | - | 2786335..2786634 (+) | 300 | WP_005165217.1 | helix-turn-helix transcriptional regulator | - |
| Y11_RS12950 (Y11_27481) | - | 2786636..2787964 (+) | 1329 | WP_005165219.1 | type II toxin-antitoxin system HipA family toxin | - |
| Y11_RS12955 (Y11_27491) | ssb | 2788053..2788601 (-) | 549 | WP_005165221.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| Y11_RS12960 (Y11_27501) | uvrA | 2789130..2791961 (+) | 2832 | WP_005165223.1 | excinuclease ABC subunit UvrA | - |
| Y11_RS12965 (Y11_27511) | - | 2792020..2792373 (-) | 354 | WP_005165225.1 | MmcQ/YjbR family DNA-binding protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 19084.10 Da Isoelectric Point: 4.9567
>NTDB_id=48749 Y11_RS12955 WP_005165221.1 2788053..2788601(-) (ssb) [Yersinia enterocolitica subsp. palearctica Y11]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGAPQDGGAQGGWGQPQQPQGGNQFSGGQTSRPAQS
APAAQPQGGNEPPMDFDDDIPF
Nucleotide
Download Length: 549 bp
>NTDB_id=48749 Y11_RS12955 WP_005165221.1 2788053..2788601(-) (ssb) [Yersinia enterocolitica subsp. palearctica Y11]
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAGCCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAAACTTCGCGCCCGGCTCAGTCA
GCACCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA
ATGGCCAGCAGAGGCGTAAACAAAGTGATTTTGGTCGGGAATTTGGGCCAAGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCTGTTGCCAATATCACCCTGGCCACTTCCGAAAGCTGGCGTGATAAAGCAACCGGCGAGCAGAAAGAAAAGACGG
AATGGCACCGTGTGGTGCTGTTTGGCAAACTAGCGGAAGTTGCTGGTGAATATTTGCGCAAAGGCTCTCAGGTCTATATC
GAAGGCGCATTGCAAACCCGTAAATGGACAGATCAGGCTGGTGTTGAGAAATACACCACTGAAGTTGTGGTTAACGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAAGGCGGTGGTGCTCCGGCGGGTGGTGGTGCACCACAAGACGGTGGCGCAC
AAGGCGGTTGGGGCCAGCCTCAGCAGCCACAAGGTGGCAACCAGTTCAGCGGTGGTCAAACTTCGCGCCCGGCTCAGTCA
GCACCAGCAGCACAACCACAAGGCGGCAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
73.913 |
100 |
0.747 |
| ssb | Glaesserella parasuis strain SC1401 |
55.729 |
100 |
0.588 |
| ssb | Neisseria gonorrhoeae MS11 |
46.809 |
100 |
0.484 |
| ssb | Neisseria meningitidis MC58 |
46.703 |
100 |
0.467 |