Detailed information NTG0487218

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: KDH82_RS05995
• Genome accession: NZ_CP073350
• Coordinates: 1363695..1364999 (+)
• Length: 434 a.a.
• NCBI ID: WP_165384058.1
• Uniprot ID: -
• Organism: Porphyromonas gingivalis strain LyG-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1358695..1369999

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KDH82_RS05985 (KDH82_05985)	-	1359048..1360508 (-)	1461	WP_097632743.1	sodium:solute symporter	-
KDH82_RS05990 (KDH82_05990)	-	1360900..1363548 (-)	2649	WP_249134636.1	DUF5686 and carboxypeptidase-like regulatory domain-containing protein	-
KDH82_RS05995 (KDH82_05995)	rarA	1363695..1364999 (+)	1305	WP_165384058.1	replication-associated recombination protein A	Machinery gene
KDH82_RS06000 (KDH82_06000)	-	1365025..1365792 (+)	768	WP_004584422.1	methyltransferase	-
KDH82_RS06005 (KDH82_06005)	rpoN	1365756..1367213 (-)	1458	WP_099841623.1	RNA polymerase factor sigma-54	-
KDH82_RS06010 (KDH82_06010)	murF	1367207..1368511 (-)	1305	WP_043898584.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	-
KDH82_RS06015 (KDH82_06015)	-	1368764..1369099 (-)	336	WP_249134637.1	hypothetical protein	-
KDH82_RS06020 (KDH82_06020)	panD	1369381..1369737 (+)	357	WP_211599691.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 434 a.a.
• Molecular weight: 48416.45 Da
• Isoelectric Point: 5.6556

>NTDB_id=487218 KDH82_RS05995 WP_165384058.1 1363695..1364999(+) (rarA) [Porphyromonas gingivalis strain LyG-2]
MKQIPLAERMRPKMLVDYVGQQHLIGPGAVLRRMIEQGQVPSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKE
VREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLKPQS
DEDLLLLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKMLNILDLLATSEVEDRLVITNEKIRQRLQENPAAFDKGG
ELHYDIASAFIKSIRGSDPDAAIYWLARLIDGGEEPSFIARRLIISAAEDIGLANPNAMLIAMACAESLDRIGWPEGRIP
LAEATIYLATSEKSNSAYLAIDSALEYVRQSGNLPVPLHLRNAPTRLMADLDYGKGYKYSHDFPEHFVSQQYLPDKAADT
SFWTPQMHTVHEAKLGERMKRWWKREKSQKDTAE

Nucleotide

• Length: 1305 bp

>NTDB_id=487218 KDH82_RS05995 WP_165384058.1 1363695..1364999(+) (rarA) [Porphyromonas gingivalis strain LyG-2]
ATGAAACAAATACCCTTGGCAGAGAGAATGCGTCCCAAGATGCTGGTCGACTATGTGGGGCAGCAGCATCTGATCGGACC
GGGAGCTGTGCTCCGGCGGATGATCGAACAGGGACAGGTGCCATCCATGATTCTGTGGGGGCCTCCCGGAGTAGGCAAGA
CCACGCTGGCCGAAATCATTGCTCACGAAGTGGATGCACCTTTCTATACATTGAGTGCGGTCAGCTCCGGTGTGAAAGAA
GTGCGAGAAGTGATAGCCGACATCGAATCCAATCGTGGCAATCTGTTCGACAAGGGCGGACGCGCCATCCTCTTCATAGA
TGAGATACACCGTTTCAGCAAGAGTCAGCAGGATTCGCTTCTGGCAGCCGTAGAGCGAGGGATAGTGACGCTGATCGGTG
CCACGACCGAAAATCCGAGTTTCGAAGTGATACGTCCGCTCCTCTCGCGCTGTCAGGTCTATGTGCTCAAACCCCAAAGT
GATGAGGATCTGCTGCTACTGGCACACAGGGCTATCGATCGGGACGAACTGCTGGCTGCCAAGCATCCTGTACTGGAGGA
GACAGAAGCTCTGCTTCTCTATGCCGGAGGCGATGCGCGAAAGATGCTGAACATCCTCGACCTTCTGGCCACAAGCGAAG
TGGAAGACCGGCTCGTCATTACCAACGAAAAGATCCGTCAGCGCTTGCAAGAAAACCCTGCTGCTTTCGACAAGGGAGGC
GAGCTCCACTATGATATAGCATCCGCCTTTATCAAAAGTATTCGGGGCAGTGATCCCGATGCGGCTATTTACTGGCTGGC
GCGCCTTATAGATGGTGGGGAGGAACCCTCATTCATCGCTCGCAGGCTGATCATATCGGCTGCGGAGGACATCGGTCTGG
CCAATCCGAACGCCATGCTCATCGCCATGGCCTGTGCCGAGTCTTTAGACCGAATCGGCTGGCCCGAAGGCCGTATTCCA
TTGGCCGAGGCTACCATTTATTTGGCTACTTCGGAGAAGAGCAATTCAGCTTATTTGGCCATCGACTCCGCTCTCGAATA
TGTCCGTCAATCAGGTAATCTTCCCGTGCCCCTACACCTGCGTAATGCCCCTACCCGTCTGATGGCCGACCTTGACTATG
GCAAGGGTTATAAATACTCGCATGATTTTCCGGAGCACTTCGTCTCACAGCAATATCTGCCCGACAAAGCTGCTGACACC
TCTTTCTGGACACCTCAAATGCACACAGTGCATGAAGCCAAGCTGGGAGAACGGATGAAGCGATGGTGGAAGAGGGAAAA
ATCCCAAAAGGATACAGCAGAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-255)

• MgsA AAA+ ATPase C terminal (MgsA_C) (256-423)

• ATPase family associated with various cellular activities (AAA) (AAA) (43-155)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.187	98.618	0.396