Detailed information NTG0487186

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: KC155_RS05985
• Genome accession: NZ_CP073349
• Coordinates: 1363678..1364982 (+)
• Length: 434 a.a.
• NCBI ID: WP_165384058.1
• Uniprot ID: -
• Organism: Porphyromonas gingivalis strain LyG-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1358678..1369982

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KC155_RS05975 (KC155_05975)	-	1359031..1360491 (-)	1461	WP_097632743.1	sodium:solute symporter	-
KC155_RS05980 (KC155_05980)	-	1360883..1363531 (-)	2649	WP_249134636.1	DUF5686 and carboxypeptidase-like regulatory domain-containing protein	-
KC155_RS05985 (KC155_05985)	rarA	1363678..1364982 (+)	1305	WP_165384058.1	replication-associated recombination protein A	Machinery gene
KC155_RS05990 (KC155_05990)	-	1365008..1365775 (+)	768	WP_004584422.1	methyltransferase	-
KC155_RS05995 (KC155_05995)	rpoN	1365739..1367196 (-)	1458	WP_099841623.1	RNA polymerase factor sigma-54	-
KC155_RS06000 (KC155_06000)	murF	1367190..1368494 (-)	1305	WP_043898584.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	-
KC155_RS06005 (KC155_06005)	-	1368747..1369082 (-)	336	WP_249134637.1	hypothetical protein	-
KC155_RS06010 (KC155_06010)	panD	1369364..1369720 (+)	357	WP_211599691.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 434 a.a.
• Molecular weight: 48416.45 Da
• Isoelectric Point: 5.6556

>NTDB_id=487186 KC155_RS05985 WP_165384058.1 1363678..1364982(+) (rarA) [Porphyromonas gingivalis strain LyG-1]
MKQIPLAERMRPKMLVDYVGQQHLIGPGAVLRRMIEQGQVPSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKE
VREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLKPQS
DEDLLLLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKMLNILDLLATSEVEDRLVITNEKIRQRLQENPAAFDKGG
ELHYDIASAFIKSIRGSDPDAAIYWLARLIDGGEEPSFIARRLIISAAEDIGLANPNAMLIAMACAESLDRIGWPEGRIP
LAEATIYLATSEKSNSAYLAIDSALEYVRQSGNLPVPLHLRNAPTRLMADLDYGKGYKYSHDFPEHFVSQQYLPDKAADT
SFWTPQMHTVHEAKLGERMKRWWKREKSQKDTAE

Nucleotide

• Length: 1305 bp

>NTDB_id=487186 KC155_RS05985 WP_165384058.1 1363678..1364982(+) (rarA) [Porphyromonas gingivalis strain LyG-1]
ATGAAACAAATACCCTTGGCAGAGAGAATGCGTCCCAAGATGCTGGTCGACTATGTGGGGCAGCAGCATCTGATCGGACC
GGGAGCTGTGCTCCGGCGGATGATCGAACAGGGACAGGTGCCATCCATGATTCTGTGGGGGCCTCCCGGAGTAGGCAAGA
CCACGCTGGCCGAAATCATTGCTCACGAAGTGGATGCACCTTTCTATACATTGAGTGCGGTCAGCTCCGGTGTGAAAGAA
GTGCGAGAAGTGATAGCCGACATCGAATCCAATCGTGGCAATCTGTTCGACAAGGGCGGACGCGCCATCCTCTTCATAGA
TGAGATACACCGTTTCAGCAAGAGTCAGCAGGATTCGCTTCTGGCAGCCGTAGAGCGAGGGATAGTGACGCTGATCGGTG
CCACGACCGAAAATCCGAGTTTCGAAGTGATACGTCCGCTCCTCTCGCGCTGTCAGGTCTATGTGCTCAAACCCCAAAGT
GATGAGGATCTGCTGCTACTGGCACACAGGGCTATCGATCGGGACGAACTGCTGGCTGCCAAGCATCCTGTACTGGAGGA
GACAGAAGCTCTGCTTCTCTATGCCGGAGGCGATGCGCGAAAGATGCTGAACATCCTCGACCTTCTGGCCACAAGCGAAG
TGGAAGACCGGCTCGTCATTACCAACGAAAAGATCCGTCAGCGCTTGCAAGAAAACCCTGCTGCTTTCGACAAGGGAGGC
GAGCTCCACTATGATATAGCATCCGCCTTTATCAAAAGTATTCGGGGCAGTGATCCCGATGCGGCTATTTACTGGCTGGC
GCGCCTTATAGATGGTGGGGAGGAACCCTCATTCATCGCTCGCAGGCTGATCATATCGGCTGCGGAGGACATCGGTCTGG
CCAATCCGAACGCCATGCTCATCGCCATGGCCTGTGCCGAGTCTTTAGACCGAATCGGCTGGCCCGAAGGCCGTATTCCA
TTGGCCGAGGCTACCATTTATTTGGCTACTTCGGAGAAGAGCAATTCAGCTTATTTGGCCATCGACTCCGCTCTCGAATA
TGTCCGTCAATCAGGTAATCTTCCCGTGCCCCTACACCTGCGTAATGCCCCTACCCGTCTGATGGCCGACCTTGACTATG
GCAAGGGTTATAAATACTCGCATGATTTTCCGGAGCACTTCGTCTCACAGCAATATCTGCCCGACAAAGCTGCTGACACC
TCTTTCTGGACACCTCAAATGCACACAGTGCATGAAGCCAAGCTGGGAGAACGGATGAAGCGATGGTGGAAGAGGGAAAA
ATCCCAAAAGGATACAGCAGAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-255)

• MgsA AAA+ ATPase C terminal (MgsA_C) (256-423)

• ATPase family associated with various cellular activities (AAA) (AAA) (43-155)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.187	98.618	0.396