Detailed information NTG0487153

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: KCI35_RS04375
• Genome accession: NZ_CP073348
• Coordinates: 1031377..1032681 (-)
• Length: 434 a.a.
• NCBI ID: WP_249158497.1
• Uniprot ID: -
• Organism: Porphyromonas gingivalis strain GMU202011
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1026377..1037681

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCI35_RS04355	panD	1027299..1027655 (-)	357	WP_211605369.1	aspartate 1-decarboxylase	-
KCI35_RS04360	murF	1027865..1029169 (+)	1305	WP_211605294.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	-
KCI35_RS04365	rpoN	1029163..1030620 (+)	1458	WP_013815895.1	RNA polymerase factor sigma-54	-
KCI35_RS04370	-	1030584..1031351 (-)	768	WP_023847029.1	methyltransferase	-
KCI35_RS04375	rarA	1031377..1032681 (-)	1305	WP_249158497.1	replication-associated recombination protein A	Machinery gene
KCI35_RS04380	-	1032765..1033223 (-)	459	WP_004584424.1	hypothetical protein	-
KCI35_RS04385	-	1033570..1035030 (+)	1461	WP_077094836.1	sodium:solute symporter	-
KCI35_RS04390	-	1035027..1035878 (+)	852	WP_099777236.1	BadF/BadG/BcrA/BcrD ATPase family protein	-
KCI35_RS04395	murQ	1035871..1036695 (+)	825	WP_021678413.1	N-acetylmuramic acid 6-phosphate etherase	-

Sequence

Protein

• Length: 434 a.a.
• Molecular weight: 48345.21 Da
• Isoelectric Point: 5.9905

>NTDB_id=487153 KCI35_RS04375 WP_249158497.1 1031377..1032681(-) (rarA) [Porphyromonas gingivalis strain GMU202011]
MKQIPLAERMRPKTLADYVGQQHLIGSGAVLRQMIEQGQTPSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKE
VREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLKPQS
DEDLLRLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKLLNILDLLATSEVEDRLVITNEKIRQRLQENPAAFDKGG
ELHYDIASAFIKSIRGSDPDAAIYWLARLIDGGEEPSFIARRLIISASEDIGLANPNAMLIAMACAEALDRIGWPEGRIP
LAEATIYLATSEKSNSAYLAIDSALEYVRQSGNLPVPLHLRNAPTRLMADLDYGKGYKYSHDFPEHFVSQQYLPDKAANT
SFWTPQMHTVHEAKLGERMKRWWKREKSQKNTAE

Nucleotide

• Length: 1305 bp

>NTDB_id=487153 KCI35_RS04375 WP_249158497.1 1031377..1032681(-) (rarA) [Porphyromonas gingivalis strain GMU202011]
ATGAAACAAATACCCTTGGCCGAGAGAATGCGTCCAAAAACGCTGGCCGACTATGTGGGGCAGCAGCATCTGATCGGATC
GGGGGCTGTGCTCCGGCAGATGATTGAGCAGGGACAGACGCCATCCATGATCCTGTGGGGGCCTCCCGGAGTAGGCAAGA
CTACGCTGGCCGAAATCATCGCTCATGAAGTGGATGCACCTTTCTATACATTGAGTGCGGTCAGCTCCGGTGTGAAAGAA
GTGCGGGAAGTAATAGCCGACATCGAATCCAATCGTGGCAATCTGTTCGACAAAGGAGGACGCGCCATCCTCTTCATCGA
CGAGATACACCGTTTCAGCAAGAGTCAGCAGGATTCACTTCTGGCAGCCGTAGAGCGAGGAATAGTGACGCTGATCGGTG
CCACGACCGAAAATCCGAGTTTCGAAGTAATACGTCCGCTCCTATCGCGCTGTCAGGTCTATGTGCTCAAACCCCAAAGT
GATGAGGATCTGCTGCGACTGGCACACAGGGCTATCGATCGGGACGAACTGCTGGCTGCCAAGCATCCTGTACTGGAGGA
GACGGAAGCTCTGCTTCTCTATGCCGGAGGCGATGCACGAAAGCTGCTGAACATCCTTGACCTTCTGGCCACAAGCGAAG
TGGAAGACCGGCTCGTCATTACCAACGAAAAGATCCGTCAGCGCTTGCAAGAAAACCCCGCAGCTTTCGACAAGGGAGGC
GAGCTCCACTATGATATAGCATCCGCCTTTATCAAAAGTATTCGGGGCAGTGATCCCGACGCGGCTATTTACTGGCTGGC
GCGCCTTATAGATGGTGGGGAGGAACCCTCATTCATCGCTCGCAGGCTGATCATATCGGCTTCGGAAGACATCGGCCTGG
CTAACCCGAATGCCATGCTCATCGCCATGGCCTGTGCCGAGGCTTTAGACCGAATCGGCTGGCCTGAAGGCCGTATTCCA
TTGGCCGAGGCTACCATTTATTTGGCTACTTCGGAGAAGAGCAATTCAGCTTATTTGGCCATCGACTCCGCTCTCGAATA
TGTCCGTCAATCAGGTAATCTTCCCGTGCCCCTACACCTGCGTAATGCCCCTACCCGTCTGATGGCCGACCTTGACTATG
GCAAGGGTTATAAATACTCGCATGATTTTCCGGAGCACTTCGTCTCACAGCAATATCTGCCCGACAAAGCTGCTAACACC
TCTTTCTGGACACCTCAAATGCACACAGTGCATGAAGCCAAGCTGGGAGAACGGATGAAGCGATGGTGGAAGAGGGAAAA
ATCCCAAAAGAATACAGCAGAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (10-131)

• MgsA AAA+ ATPase C terminal (MgsA_C) (256-423)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.187	98.618	0.396