Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   D1J36_RS08830 Genome accession   NZ_CP073239
Coordinates   1909093..1910370 (+) Length   425 a.a.
NCBI ID   WP_154136810.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain RCAD0416     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1904093..1915370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1J36_RS08810 (D1J36_008800) - 1905872..1906549 (-) 678 WP_153935313.1 VTT domain-containing protein -
  D1J36_RS08815 (D1J36_008805) prfB 1906627..1907739 (-) 1113 WP_252339438.1 peptide chain release factor 2 -
  D1J36_RS08820 (D1J36_008810) lgt 1907900..1908751 (-) 852 WP_154136808.1 prolipoprotein diacylglyceryl transferase -
  D1J36_RS08825 (D1J36_008815) yidD 1908759..1909013 (-) 255 WP_154136809.1 membrane protein insertion efficiency factor YidD -
  D1J36_RS08830 (D1J36_008820) rarA 1909093..1910370 (+) 1278 WP_154136810.1 replication-associated recombination protein A Machinery gene
  D1J36_RS08835 (D1J36_008825) - 1910367..1910978 (-) 612 WP_154136811.1 L-threonylcarbamoyladenylate synthase -
  D1J36_RS08840 (D1J36_008830) - 1910962..1911768 (-) 807 WP_154136812.1 lysophospholipid acyltransferase family protein -
  D1J36_RS08845 (D1J36_008835) - 1911797..1912417 (-) 621 WP_154136813.1 CoA pyrophosphatase -
  D1J36_RS08850 (D1J36_008840) - 1912421..1913113 (-) 693 WP_154136814.1 TrkA family potassium uptake protein -
  D1J36_RS08855 (D1J36_008845) - 1913121..1914869 (-) 1749 WP_154136815.1 potassium transporter TrkG -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47605.37 Da        Isoelectric Point: 6.9197

>NTDB_id=487135 D1J36_RS08830 WP_154136810.1 1909093..1910370(+) (rarA) [Riemerella anatipestifer strain RCAD0416]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVVLIGATTENPSFEVVSALLSRSQVYVLKPLSYE
KLEELATIAVARFNQDENTDFVIEDNQGFIQYSGGDARKLINSVEWVLNQFKGSRQNQLSSEAILKILQETVPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEAMALAKKTAHLPVPLHLRNAPTKLMKELDYGKDYRYAHVYEGNFVPQEFLPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=487135 D1J36_RS08830 WP_154136810.1 1909093..1910370(+) (rarA) [Riemerella anatipestifer strain RCAD0416]
TTGAATTCAAATATCCCTTTAGCAGAGAAATTACGCCCCAAAACTTTAGATGAAATGCTTGGGCAAGAGCATCTTACAGG
TAAAGACGGGACTATAAGAAAAATGTTGGATACCGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTAAAA
GAGGTAAGAGAAGTGATAGACGATGCCAAGAAACAACACTTATTTTCTGGTAAATCTCCTATTTTGTTTATAGATGAAAT
TCATAGATTTAATAAATCACAACAAGATTCTTTGCTTCACGCTGTGGAAAAAGGTTGGGTAGTTTTGATAGGAGCAACGA
CTGAAAATCCTAGTTTTGAAGTGGTTTCGGCATTATTATCTCGCTCCCAAGTTTATGTTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAATTGGCTACCATTGCGGTCGCTCGTTTCAATCAAGATGAAAATACAGATTTTGTTATCGAAGATAATCA
AGGGTTTATACAATATTCGGGTGGTGATGCTAGAAAACTCATCAATTCGGTAGAGTGGGTGCTTAATCAGTTTAAAGGCT
CTAGACAAAATCAGTTATCTAGTGAGGCTATTTTGAAAATTTTACAAGAAACCGTACCTGTTTATGATAAAAATGGAGAA
CAACATTATGATGTAATTTCAGCTTTTATAAAATCTATTAGAGGGAGTGATGTTAATGCTGCTTTGTATTGGTTAGGGAG
AATGCTCGTAGGAGGTGAAGATATTAAATTTATTGCAAGGCGGCTTTTGATATTGGCGGCAGAAGATATAGGTTTGGCTA
ACCCTAACGCTCTCACGATGGCTAACAGTTGTTTTCAATCGGTTAATGTTATAGGTTATCCCGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCCTCACCTAAGAGTAATTCAGCGTATCAAGCTATCAATGAGGCGATGGCGTTGGC
GAAAAAAACAGCTCATTTGCCTGTGCCGTTGCACCTAAGAAATGCACCTACAAAACTGATGAAAGAGCTAGATTATGGTA
AAGATTACCGTTACGCTCACGTTTATGAGGGAAATTTTGTGCCACAAGAATTTCTTCCTGAAGAATTATCAGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCTACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGTGATAAATATTAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(44-153)

AAA C-terminal domain (AAA_assoc_2)

(189-254)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.447

94.824

0.384