Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   KCG51_RS05725 Genome accession   NZ_CP073119
Coordinates   1177620..1178225 (+) Length   201 a.a.
NCBI ID   WP_049329607.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1172620..1183225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS05710 (KCG51_05720) rnr 1172629..1175109 (+) 2481 WP_250579751.1 ribonuclease R -
  KCG51_RS05715 (KCG51_05725) - 1175191..1175538 (+) 348 WP_250579753.1 ArsC family reductase -
  KCG51_RS05720 (KCG51_05730) - 1175684..1177537 (+) 1854 WP_250579761.1 SurA N-terminal domain-containing protein -
  KCG51_RS05725 (KCG51_05735) recR 1177620..1178225 (+) 606 WP_049329607.1 recombination mediator RecR Machinery gene
  KCG51_RS05730 (KCG51_05740) - 1178288..1178575 (-) 288 WP_003683377.1 hypothetical protein -
  KCG51_RS05735 (KCG51_05745) - 1178790..1180039 (+) 1250 Protein_1101 lipoprotein-releasing ABC transporter permease subunit -
  KCG51_RS05740 (KCG51_05750) lolD 1180032..1180715 (+) 684 WP_003679081.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KCG51_RS05745 (KCG51_05755) recD 1180848..1182611 (+) 1764 WP_250579775.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22305.75 Da        Isoelectric Point: 5.0772

>NTDB_id=487068 KCG51_RS05725 WP_049329607.1 1177620..1178225(+) (recR) [Neisseria subflava strain HP0069]
MSKNPDAFVRLINALKILPNVGPKSAQRMAYQLLQYKREEAQELVDALQFALKQVQHCRMCNTFCEGDLCEICADEKREK
SRLMIVHMPADVSSMEAANCHDGLYFVLMGQVSPAQGMDISAVALDKLVARLQASDIEEIIIATNFTAEGDATAYVLAEL
FKNLPYKVSRLARGIPLGGEMEYVDAGTLAQAVYDRRNIQS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=487068 KCG51_RS05725 WP_049329607.1 1177620..1178225(+) (recR) [Neisseria subflava strain HP0069]
ATGAGTAAAAATCCTGATGCCTTTGTCCGCTTGATTAATGCCTTAAAAATCCTGCCCAATGTCGGCCCGAAATCCGCACA
ACGCATGGCTTACCAGCTTTTACAGTATAAACGCGAAGAAGCGCAGGAGTTGGTGGATGCTTTGCAATTTGCTTTGAAAC
AGGTGCAACATTGTCGGATGTGTAATACCTTTTGCGAAGGCGATTTGTGTGAAATTTGCGCGGATGAAAAACGCGAGAAA
AGCCGCTTGATGATTGTGCATATGCCGGCGGATGTTTCCAGTATGGAGGCGGCTAATTGCCATGATGGCCTGTATTTTGT
TTTGATGGGGCAAGTCAGTCCTGCGCAGGGTATGGATATTTCGGCAGTAGCATTAGATAAGTTGGTTGCCCGTTTGCAGG
CGAGTGATATTGAGGAAATTATCATTGCAACCAACTTCACAGCCGAAGGCGATGCGACAGCGTATGTATTGGCGGAATTG
TTTAAAAATCTTCCTTATAAAGTCAGCCGATTGGCAAGGGGAATCCCTTTGGGCGGCGAGATGGAATATGTGGATGCCGG
TACTTTGGCTCAGGCTGTTTACGATAGAAGAAATATTCAATCTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.563

98.01

0.368