Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   K747_RS02360 Genome accession   NC_021215
Coordinates   475291..475557 (-) Length   88 a.a.
NCBI ID   WP_015645555.1    Uniprot ID   -
Organism   Helicobacter pylori UM032     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470291..480557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K747_RS02345 - 471090..471278 (+) 189 Protein_464 DUF1104 domain-containing protein -
  K747_RS02350 - 471241..472872 (-) 1632 WP_015645553.1 type IA DNA topoisomerase -
  K747_RS02355 (K747_09080) comB4 472875..475244 (-) 2370 WP_238984715.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  K747_RS02360 (K747_09075) comB3 475291..475557 (-) 267 WP_015645555.1 hypothetical protein Machinery gene
  K747_RS02365 (K747_09070) - 475558..475860 (-) 303 WP_015645556.1 hypothetical protein -
  K747_RS02370 (K747_09065) - 475857..477380 (-) 1524 WP_015645557.1 hypothetical protein -
  K747_RS02375 (K747_09060) - 477387..477681 (-) 295 Protein_470 hypothetical protein -
  K747_RS08400 (K747_12420) - 477701..478479 (-) 779 Protein_471 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10090.92 Da        Isoelectric Point: 5.5485

>NTDB_id=48705 K747_RS02360 WP_015645555.1 475291..475557(-) (comB3) [Helicobacter pylori UM032]
MALHIVCVESINIRGISKRETFLGLNLDSWIVSFLMSAWLLSFQPLYAMGLMASCVFVFYILEFFDEDITAILHALFTLR
TGARNYYA

Nucleotide


Download         Length: 267 bp        

>NTDB_id=48705 K747_RS02360 WP_015645555.1 475291..475557(-) (comB3) [Helicobacter pylori UM032]
ATGGCATTGCATATTGTTTGTGTTGAAAGTATCAACATTAGAGGAATCAGCAAAAGAGAAACTTTTTTGGGATTAAACTT
GGATAGTTGGATTGTTAGTTTCTTAATGTCGGCATGGTTACTTTCATTCCAACCACTTTATGCTATGGGTTTAATGGCTA
GTTGTGTGTTTGTATTCTATATTTTAGAATTTTTTGATGAAGATATAACAGCCATTTTGCATGCGCTTTTCACATTAAGG
ACAGGAGCTAGAAATTATTATGCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

40.964

94.318

0.386

Multiple sequence alignment