Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   KCG54_RS06245 Genome accession   NZ_CP073115
Coordinates   1293814..1294419 (-) Length   201 a.a.
NCBI ID   WP_254323694.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0077     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1288814..1299419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG54_RS06225 (KCG54_06275) recD 1289427..1291190 (-) 1764 WP_254323692.1 exodeoxyribonuclease V subunit alpha Machinery gene
  KCG54_RS06230 (KCG54_06280) lolD 1291323..1292006 (-) 684 WP_003679081.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KCG54_RS06235 (KCG54_06285) - 1291999..1293249 (-) 1251 WP_254323693.1 lipoprotein-releasing ABC transporter permease subunit -
  KCG54_RS06240 (KCG54_06290) - 1293464..1293751 (+) 288 WP_003683377.1 hypothetical protein -
  KCG54_RS06245 (KCG54_06295) recR 1293814..1294419 (-) 606 WP_254323694.1 recombination mediator RecR Machinery gene
  KCG54_RS06250 (KCG54_06300) - 1294502..1296355 (-) 1854 WP_254323695.1 SurA N-terminal domain-containing protein -
  KCG54_RS06255 (KCG54_06305) - 1296501..1296848 (-) 348 WP_250579753.1 ArsC family reductase -
  KCG54_RS06260 (KCG54_06310) rnr 1296931..1299411 (-) 2481 WP_254323696.1 ribonuclease R -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22333.80 Da        Isoelectric Point: 5.0772

>NTDB_id=486856 KCG54_RS06245 WP_254323694.1 1293814..1294419(-) (recR) [Neisseria subflava strain TT0077]
MSKNPDAFVRLINALKILPNVGPKSAQRMAYQLLQYKREEAQELVDALQFALKQVQHCRMCNTFCEGDLCEICADEKREK
SRLMIVHMPADVSSMEAANCHDGLYFVLMGQVSPAQGMDISAVALDKLVARLQVSDIEEIIIATNFTAEGDATAYVLAEL
FKNLPYKVSRLARGIPLGGEMEYVDAGTLAQAVYDRRNIQS

Nucleotide


Download         Length: 606 bp        

>NTDB_id=486856 KCG54_RS06245 WP_254323694.1 1293814..1294419(-) (recR) [Neisseria subflava strain TT0077]
ATGAGTAAAAATCCTGATGCCTTTGTCCGTTTGATTAATGCATTAAAAATCCTGCCCAATGTCGGCCCGAAATCCGCACA
ACGCATGGCTTACCAGCTTTTACAGTACAAACGCGAAGAAGCGCAGGAGTTGGTGGATGCTTTGCAATTTGCCTTGAAAC
AGGTGCAGCATTGTCGGATGTGCAACACATTTTGCGAAGGCGATTTGTGTGAAATTTGTGCGGACGAAAAACGTGAGAAA
AGCCGCTTGATGATTGTACATATGCCAGCGGACGTTTCCAGTATGGAGGCGGCTAATTGTCATGATGGCCTGTATTTCGT
TCTGATGGGGCAAGTCAGTCCGGCGCAGGGCATGGATATTTCGGCAGTAGCGTTAGATAAGCTGGTTGCCCGTTTGCAGG
TGAGCGATATTGAGGAAATTATCATTGCAACCAACTTCACAGCCGAAGGCGATGCGACAGCATATGTATTGGCAGAATTG
TTTAAAAACCTTCCTTATAAAGTCAGCCGATTGGCAAGGGGAATCCCTTTAGGCGGCGAGATGGAATATGTGGATGCCGG
TACTTTGGCTCAAGCTGTTTACGATAGAAGGAATATCCAATCTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.071

98.01

0.373