Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   TL13_RS09555 Genome accession   NC_021213
Coordinates   1946360..1947643 (+) Length   427 a.a.
NCBI ID   WP_015647541.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1941360..1952643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS09525 (TL13_1905) - 1941749..1942306 (-) 558 WP_015647534.1 hypothetical protein -
  TL13_RS09530 (TL13_1906) - 1942547..1943263 (-) 717 WP_015647535.1 DUF554 domain-containing protein -
  TL13_RS09535 (TL13_1907) - 1943268..1944014 (-) 747 WP_015647536.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  TL13_RS09540 (TL13_1908) prmA 1944016..1944969 (-) 954 WP_015647537.1 50S ribosomal protein L11 methyltransferase -
  TL13_RS10975 (TL13_1909) - 1945198..1945311 (+) 114 WP_015647538.1 putative holin-like toxin -
  TL13_RS09545 (TL13_1910) - 1945483..1945953 (-) 471 WP_015647539.1 DUF3013 family protein -
  TL13_RS09550 (TL13_1911) - 1945955..1946290 (-) 336 WP_015647540.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
  TL13_RS09555 (TL13_1912) rarA 1946360..1947643 (+) 1284 WP_015647541.1 replication-associated recombination protein A Machinery gene
  TL13_RS09565 (TL13_1914) nrdG 1948124..1948681 (-) 558 WP_002939123.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  TL13_RS09575 (TL13_1915) - 1948868..1949362 (-) 495 WP_015647542.1 GNAT family N-acetyltransferase -
  TL13_RS09580 (TL13_1916) - 1949364..1950710 (-) 1347 WP_015647543.1 bifunctional metallophosphatase/5'-nucleotidase -
  TL13_RS11010 (TL13_1917) - 1950712..1950846 (-) 135 WP_015647544.1 hypothetical protein -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 47185.86 Da        Isoelectric Point: 6.7333

>NTDB_id=48681 TL13_RS09555 WP_015647541.1 1946360..1947643(+) (rarA) [Streptococcus suis TL13]
MPANLALRMRPKSIDEVIGQEHLVGSGKIIRRMIDANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATTDNQKRL
QEIAEEAKFSGGLVLLLDEIHRLNKTKQDFLLPLLENGNIIMIGATTENPFFSILPAIRSRVQIFELQPLQTSHIRQALE
LALTDTERGFDFPVTIEPEALDFLTNATNGDLRAAYNSLELAVLSTKESKGGRHIDLDAVENSLQKSYISMDKNGDAHYD
ILSALQKSIRGSDVNASLHYAARLIEAEDLPSLARRLTVIAYEDIGLANPEAQIHTVTALEAAQKIGFPEARILIANVVI
DLALSPKSNSAYLAMDAALADLRKNGHLPIPNHLRDGHYAGSKELGNAIGYQYPHAYPEKWVDQQYLPDKLLAADYFTAN
DTGKYERALGMTQEKIKNLKKNRRQNP

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=48681 TL13_RS09555 WP_015647541.1 1946360..1947643(+) (rarA) [Streptococcus suis TL13]
ATGCCAGCCAATCTCGCCCTTCGTATGCGGCCCAAATCCATTGATGAAGTCATCGGTCAGGAACACCTGGTCGGTTCTGG
AAAGATTATCCGCCGCATGATTGATGCCAATATGCTGTCGTCCATGATTCTCTACGGTCCGCCGGGAATTGGCAAGACCT
CGATTGCGTCCGCAATTGCTGGCACGACCAAGTATGCCTTTCGGACCTTTAATGCCACGACCGACAACCAAAAACGCCTG
CAGGAAATCGCTGAAGAGGCTAAGTTTTCTGGCGGTCTGGTTCTCCTGCTCGATGAAATCCACCGCCTTAACAAGACCAA
GCAGGACTTCCTGCTTCCTCTCTTGGAAAACGGCAATATCATCATGATTGGAGCGACGACGGAAAATCCGTTTTTCTCAA
TCCTGCCCGCCATTCGCAGTCGGGTGCAGATTTTTGAATTGCAACCTTTGCAAACCAGCCACATCCGACAAGCCTTGGAA
CTGGCTCTGACAGACACCGAACGTGGTTTTGATTTTCCTGTCACCATTGAGCCTGAGGCTCTGGATTTTCTGACAAATGC
GACAAACGGTGACCTTCGGGCTGCCTACAATTCACTAGAATTGGCTGTACTGTCTACCAAGGAAAGCAAGGGCGGACGCC
ATATCGACTTGGACGCCGTGGAAAATAGCCTACAGAAATCCTACATCAGCATGGACAAGAACGGCGATGCCCACTACGAT
ATCCTCTCCGCCCTACAAAAATCCATTCGGGGTAGCGATGTCAATGCCAGCCTCCACTACGCCGCTCGTTTGATTGAGGC
CGAAGATCTGCCTAGTCTGGCTCGTCGCTTGACGGTCATTGCCTACGAAGACATCGGCTTGGCCAATCCAGAGGCTCAGA
TTCATACGGTGACGGCCCTTGAAGCCGCCCAGAAAATTGGCTTTCCAGAAGCACGGATTTTGATTGCCAATGTGGTGATT
GATTTGGCTCTTTCTCCCAAGTCCAATTCTGCCTATCTGGCTATGGATGCAGCTCTGGCTGATTTGCGAAAGAACGGTCA
TCTGCCTATTCCAAATCATCTTCGGGATGGCCACTATGCTGGCAGCAAGGAGCTGGGAAATGCTATTGGCTACCAGTATC
CGCATGCCTATCCTGAAAAATGGGTGGATCAGCAATACCTGCCCGATAAGTTACTAGCTGCGGACTACTTCACCGCCAAC
GACACTGGAAAATACGAGCGTGCCTTGGGCATGACACAAGAAAAGATAAAAAATTTGAAAAAAAATAGACGCCAAAATCC
TTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(173-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.33

97.892

0.581

Multiple sequence alignment