Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   JNUCC41_RS00630 Genome accession   NZ_CP062163
Coordinates   124386..126761 (-) Length   791 a.a.
NCBI ID   WP_192205931.1    Uniprot ID   -
Organism   Brevibacillus sp. JNUCC-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 119386..131761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC41_RS00615 (JNUCC41_00615) dtd 120907..121350 (-) 444 WP_192205929.1 D-aminoacyl-tRNA deacylase -
  JNUCC41_RS00620 (JNUCC41_00620) - 121366..123564 (-) 2199 WP_192205930.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  JNUCC41_RS00625 (JNUCC41_00625) - 123883..124395 (-) 513 WP_061464220.1 adenine phosphoribosyltransferase -
  JNUCC41_RS00630 (JNUCC41_00630) recJ 124386..126761 (-) 2376 WP_192205931.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  JNUCC41_RS00635 (JNUCC41_00635) secDF 126908..129169 (-) 2262 WP_192205932.1 protein translocase subunit SecDF -
  JNUCC41_RS00640 (JNUCC41_00640) - 129365..129670 (-) 306 WP_192205933.1 post-transcriptional regulator -
  JNUCC41_RS00645 (JNUCC41_00645) spoVB 129841..131403 (+) 1563 WP_192205934.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89154.61 Da        Isoelectric Point: 4.8891

>NTDB_id=486638 JNUCC41_RS00630 WP_192205931.1 124386..126761(-) (recJ) [Brevibacillus sp. JNUCC-41]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLNTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVDEAKLAGEL
GMDYILTDHHEPGPELPEALAIIHPKLEDSSYPFKELAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSQSLEEATELANEINDINKE
RQEMVAAMAEEAIAEVEENYRPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDREKGLAKGSARSIAGFDLF
QSLSACREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEQLNEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGENHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVNHWQLFDYRGKGQAEKWLADIPVQNRKIVIFSEDIYRRYPFLQNHPDLVHIKNELDAEQLDCFEGHLAFMDMPPS
REYLKRVIANKNPSRIYAHFSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=486638 JNUCC41_RS00630 WP_192205931.1 124386..126761(-) (recJ) [Brevibacillus sp. JNUCC-41]
ATGTTAAAGCCAAAAACCCGGTGGAACTTACGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGAATACGATTGAAAGTGCCCGATCATTTTTATTTGTAAAAA
ATCAAACTTTTCATGATCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAAGAAGCGATTCAAAATGGA
GAAAAAATACGTATATTTGGTGATTATGATGCGGATGGCGTGACATCGACGACAGTGATGATGACGGCGCTGACAAGATT
GGGGGCCGATGTTGACTTTTATATCCCGAATCGGTTTACAGAAGGATATGGCCCGAATCCAATGGCATTCCGCCTTGCAG
CCGAGCAAGGGGTGAAGGTATTAATAACCGTCGATACCGGAATTTCTGCAGTCGATGAAGCGAAACTTGCCGGCGAGCTT
GGCATGGATTATATTTTGACCGACCACCATGAACCGGGACCGGAACTGCCTGAGGCATTGGCAATCATCCACCCTAAACT
TGAGGACAGTTCCTATCCATTTAAAGAGCTTGCCGGAGTAGGGGTCGCATTTAAGCTGGCACACGCCTTGCTTGGGGAAT
TGCCTGAGGATTTGCTTGAGATAGCGGCAATCGGCACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCCGCGAAAGGCATCGAGCAGTTACGTTTGACGCGCCGCCCGGGACTTGTTGCCTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCGATGGCACCGCGGATCAATGCTGTCGGGCGCCTTGGAGATGCCGATC
CCGCTGTCGATTTATTGATGTCACAAAGTCTGGAAGAAGCGACGGAACTTGCCAATGAAATCAATGATATCAATAAAGAG
CGACAGGAAATGGTTGCGGCAATGGCGGAAGAAGCGATTGCTGAAGTCGAGGAAAACTACCGGCCGGAGTCCAATGGAGT
GCTCATCATCGGCAGGGAGGGCTGGAACGCCGGAGTTGTGGGAATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CGACGATTGTATTGAGCTATGACCGGGAAAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGCCGGTTTCGATTTATTT
CAAAGTCTTTCCGCCTGCCGTGAAATGCTGCCTCATTTCGGTGGACATCCGATGGCTGCTGGAATGACCTTGAAAATAGA
AGATGTTCAGGAGCTCAGGGACCGCATGAACTTGATTGCGAAGGAACAACTGAACGAAGAGGACTTCACACCCATCACAA
ACTTGGACGGGGCAACGACTTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTGGCGCCATTCGGGGTT
ACGAATCCTAAGCCGAAGATTTTGATAGATTCCGTCCAGCTTTCTAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTACAGCTGGAAGATGGTGAAAATCACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCCCACGCTGAAGTCTCGGTTATTGGTGAGCTTTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGAACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGTACAAAACCGGAAGATCGTCATTTTCTCGGAAGATATTTATCGCAGATACCCATTTTTGCAAAACCATCCAGATCTCG
TTCATATCAAGAATGAACTGGATGCAGAGCAGCTCGACTGCTTCGAAGGTCATTTGGCATTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGTGATTGCCAATAAGAACCCTTCGCGTATCTACGCTCACTTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCAACAAGGGATCATTTTAAATGGTTCTATGCCTTCCTTGCCAAAAAAGGTCCGCTCGATGTGAAAA
GATACGGTGATGACCTGGCTAAATATCGCGGCTGGTCAAGAGATACAGTGGATTTTATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAGAATGGGTTAATTATGCTTACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(309-437)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

RecJ OB domain (RecJ_OB)

(456-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.729

100

0.549