Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   JNUCC41_RS00295 Genome accession   NZ_CP062163
Coordinates   45782..48187 (-) Length   801 a.a.
NCBI ID   WP_192205820.1    Uniprot ID   -
Organism   Brevibacillus sp. JNUCC-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 40782..53187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC41_RS00270 (JNUCC41_00270) - 42013..43089 (-) 1077 WP_192205808.1 AI-2E family transporter -
  JNUCC41_RS00275 (JNUCC41_00275) - 43319..43534 (-) 216 WP_063233024.1 hypothetical protein -
  JNUCC41_RS00280 (JNUCC41_00280) - 43524..43988 (-) 465 WP_192207982.1 PRC-barrel domain-containing protein -
  JNUCC41_RS00285 (JNUCC41_00285) - 44355..45125 (-) 771 WP_192205816.1 TPM domain-containing protein -
  JNUCC41_RS00290 (JNUCC41_00290) - 45125..45691 (-) 567 WP_192205818.1 LemA family protein -
  JNUCC41_RS00295 (JNUCC41_00295) recD2 45782..48187 (-) 2406 WP_192205820.1 ATP-dependent RecD-like DNA helicase Machinery gene
  JNUCC41_RS00300 (JNUCC41_00300) - 48224..48889 (-) 666 WP_192205821.1 tetratricopeptide repeat protein -
  JNUCC41_RS00305 (JNUCC41_00305) mnmA 49011..50126 (-) 1116 WP_192205823.1 tRNA 2-thiouridine(34) synthase MnmA -
  JNUCC41_RS00310 (JNUCC41_00310) - 50156..51301 (-) 1146 WP_192205825.1 cysteine desulfurase family protein -
  JNUCC41_RS00315 (JNUCC41_00315) - 51362..51781 (-) 420 WP_034308657.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90638.40 Da        Isoelectric Point: 4.8212

>NTDB_id=486637 JNUCC41_RS00295 WP_192205820.1 45782..48187(-) (recD2) [Brevibacillus sp. JNUCC-41]
MSQQDSLDLFSEEKMFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQYHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVDSLGEKAISKILVQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTGQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDHVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLKEILSEEEMPQEKEEVHQQSSYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=486637 JNUCC41_RS00295 WP_192205820.1 45782..48187(-) (recD2) [Brevibacillus sp. JNUCC-41]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAATGTTCATGAAAGGAAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAACATGTACTCGGTTGTAAGAATTCGCGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGGGCGATGAAGGAACATCCGCGTTTTGGC
CTTCAATACCATGTAGAGCATTTTCGTAAGGATCTGCCTCAATCCAAGGAAGGAATCGTCAGTTATTTATCCGGTGACCT
TTTCAAGGGGATCGGGAAAAAAACAGCTGAAAGCATTGTTGATTCACTGGGTGAAAAGGCAATTTCAAAAATTCTGGTTC
AGCCTTCGCTACTTGATGACATCCCGAAGCTATCCGGGGAAAAGGCAAAGGGTCTCTATGATACATTGGTCGAGCATCAA
GGGCTGGAGCAGGTGATGATTGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAGATATATCAAATGTATAA
GCAGGATACAATCACGATGGTTCAGGGAAATCCGTATAAGCTTGTTGAGGATATTGAAGGGATTGGCTTTGGAAGGGCGG
ATGAGCTTGGGCATCAGCTGGGCATTTCCGGCAGCCATCCCGATCGAATCAAGGCTGCGTGTTTGTATACGCTTGAATCA
CAATGCCTTCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTATTGGAGGCTGTCAAACGTCTTCTGGAGGAAAATAA
ACGGGACCGTATTGAGTTTACGAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGAAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTATTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGAGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCGGAATCGGAGTTCTTGCTGGCACTTGGAGAGCTGGAAGAACGGCTGGATGTATCTTATGCACC
GGCCCAAAAGGAAGCGATCCAAACAGCCCTGCAATCACCCATGTTAATCTTGACGGGCGGACCTGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAACTATATGCAGAGCTGCATGGTGTATCCATGGACATTAATGATTATAAAAAAGAAGGA
AGCGATCCATTTCCATTCGTACTTGCGGCCCCTACTGGCCGTGCAGCGAAACGAATGGCCGAATCGACTGGGCTCCCGGC
TGTTACGATTCACCGTTTGCTGGGGTGGAACGGGAGCGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TCGTGATCATCGATGAGGTTTCCATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTGCCATCTGTTGGACCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTGGAACATATTTATCGTCAAGCTGATGGCTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAAGAAGATCGATCGTTCATTCGCTGCCAAACTGGTCAAATCCCCCAA
GTAATCGAGAAGGTGGTTGCCAATGCGAGGACGAAAGGCTTCACGGCCAAGGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGGATTGATGCCCTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAGAAGCGGCGGGAAA
TAAAATTCGGAGATGTAATATACAGAACGGGAGATAAGGTGCTTCAACTGGTGAACCAACCGGAGGAGGGGGTCTTTAAT
GGCGATATGGGTGAAATCGTGTCCATCTTGTTCGCTAAAGAAAATACCGATCATGTCGATAAAGTAATCATATCATTCGA
AGGCATCGAAGTGACTTATACGAAACAGGACTTGAACCAGATTACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGTGAATTCCCCATTGTCATTTTACCTGTAGTGAAAAGTTATTATCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTTTGTGGCGAAGAAGATGCATTCCGTTTAGGGATCGAGCGGAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGAAAGAGATTTTGAGTGAAGAAGAAATGCCGCAGGAAAAGGAAGAGGTAC
ATCAACAATCAAGTTATCTTGATATTCTCATGCATGCTGATCCGATGATCGGTATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

AAA domain (AAA_30)

(345-555)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.297

100

0.623