Detailed information NTG0486557

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IF654_RS04375
• Genome accession: NZ_CP062158
• Coordinates: 855920..856780 (-)
• Length: 286 a.a.
• NCBI ID: WP_269468886.1
• Uniprot ID: -
• Organism: Pseudomonas lundensis strain 2T.2.5.2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 850920..861780

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF654_RS04340 (IF654_06580)	-	851456..852757 (-)	1302	WP_094987427.1	NAD(P)/FAD-dependent oxidoreductase	-
IF654_RS04345 (IF654_06575)	-	852824..852997 (-)	174	WP_047273641.1	DUF3094 family protein	-
IF654_RS04350 (IF654_06570)	-	853053..853580 (-)	528	WP_094987426.1	MOSC domain-containing protein	-
IF654_RS04355 (IF654_06565)	-	853577..854206 (-)	630	WP_047273644.1	DUF1780 domain-containing protein	-
IF654_RS04360 (IF654_06560)	-	854338..855027 (+)	690	WP_047283079.1	energy-coupling factor ABC transporter permease	-
IF654_RS04365 (IF654_06555)	yacG	855095..855298 (-)	204	WP_047279000.1	DNA gyrase inhibitor YacG	-
IF654_RS04370 (IF654_06550)	coaE	855295..855918 (-)	624	WP_047281317.1	dephospho-CoA kinase	-
IF654_RS04375 (IF654_06545)	pilD	855920..856780 (-)	861	WP_269468886.1	prepilin peptidase	Machinery gene
IF654_RS04380 (IF654_06540)	pilC	856783..857988 (-)	1206	WP_194862741.1	type II secretion system F family protein	Machinery gene
IF654_RS04385 (IF654_06535)	-	858212..858619 (+)	408	WP_047273654.1	pilin	-
IF654_RS04395 (IF654_06525)	-	858888..860387 (+)	1500	WP_194862740.1	DNA-3-methyladenine glycosylase 2 family protein	-
IF654_RS04400 (IF654_06520)	-	860390..860887 (+)	498	WP_047278992.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
IF654_RS04405 (IF654_06515)	nadC	860909..861757 (-)	849	WP_047274271.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31477.59 Da
• Isoelectric Point: 7.9271

>NTDB_id=486557 IF654_RS04375 WP_269468886.1 855920..856780(-) (pilD) [Pseudomonas lundensis strain 2T.2.5.2]
MIDFLSVHPAAFIAGALLLGLLVGSFLNVLVWRLPKMLEQDWQSQAREVLGLAPADDKTTYNLCLPASHCPECQHRLRPW
ENIPLLSYALLRGKCSQCKTLISPLYPLTELACGLVSGFIAWHFGLTLQAGWMLLLTWGLIAICLIDARHQIVPDVLVLP
LLWLGLLLNSFELFTTLSQAVWGAALGYLSLWSIFWLFKLMTGKDGMGHGDFKLLALFGAWGGVSVLPLTILLSSLVGAL
VGVSLLLLRRAHRATAIPFAPYLAIAGWIALLWGGQMTAFYWQLAT

Nucleotide

• Length: 861 bp

>NTDB_id=486557 IF654_RS04375 WP_269468886.1 855920..856780(-) (pilD) [Pseudomonas lundensis strain 2T.2.5.2]
ATGATCGATTTTTTAAGCGTCCACCCCGCTGCGTTTATCGCGGGTGCCTTGTTGCTGGGCCTGTTGGTCGGCAGTTTCCT
GAATGTACTGGTCTGGCGATTGCCGAAAATGCTTGAGCAGGACTGGCAGTCTCAGGCCCGGGAAGTGCTTGGGCTTGCCC
CTGCGGACGATAAAACGACCTACAACCTGTGCCTGCCGGCGTCTCACTGCCCTGAGTGCCAGCACCGCTTACGCCCCTGG
GAGAACATCCCGCTGCTCAGTTATGCGCTCTTGCGCGGCAAGTGCTCGCAGTGCAAAACCCTCATCAGCCCCCTCTACCC
CCTGACCGAGCTGGCGTGCGGCCTCGTGTCTGGCTTTATTGCCTGGCATTTTGGCTTGACCCTTCAGGCTGGCTGGATGC
TGTTGCTGACTTGGGGCCTGATCGCCATTTGCCTGATCGACGCCCGGCATCAAATCGTGCCCGATGTACTGGTACTGCCG
TTGCTATGGCTCGGACTGCTGCTCAACAGCTTCGAACTTTTCACCACGCTGTCCCAGGCCGTTTGGGGGGCAGCGCTGGG
TTACCTGAGCTTGTGGTCGATTTTTTGGTTGTTCAAATTGATGACCGGTAAAGACGGCATGGGCCATGGGGATTTCAAGT
TGCTGGCCCTGTTTGGCGCGTGGGGGGGCGTATCGGTCTTGCCGTTAACGATCCTGTTGTCATCGCTGGTCGGGGCGCTG
GTGGGCGTCAGTTTGTTGCTGTTGCGCCGCGCTCATCGCGCGACGGCCATCCCCTTTGCCCCCTATCTGGCCATTGCCGG
GTGGATTGCATTGCTCTGGGGTGGTCAAATGACCGCTTTCTATTGGCAACTTGCGACGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.421	99.65	0.483
pilD	Acinetobacter baumannii D1279779	48.029	97.552	0.469
pilD	Acinetobacter nosocomialis M2	47.67	97.552	0.465
pilD	Vibrio campbellii strain DS40M4	44.523	98.951	0.441
pilD	Neisseria gonorrhoeae MS11	47.843	89.161	0.427