Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   KBU60_RS08115 Genome accession   NZ_CP073068
Coordinates   1691534..1693078 (+) Length   514 a.a.
NCBI ID   WP_025631727.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FB-11     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1686534..1698078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBU60_RS08090 (KBU60_08090) - 1686835..1687155 (+) 321 WP_212569226.1 STAS domain-containing protein -
  KBU60_RS08095 (KBU60_08095) - 1687182..1688084 (+) 903 WP_005491469.1 OmpA family protein -
  KBU60_RS08100 (KBU60_08100) - 1688081..1690183 (+) 2103 WP_212569227.1 SLBB domain-containing protein -
  KBU60_RS08105 (KBU60_08105) - 1690183..1690869 (+) 687 WP_025535163.1 CpsD/CapB family tyrosine-protein kinase -
  KBU60_RS08110 (KBU60_08110) - 1690882..1691262 (+) 381 WP_005454845.1 Hpt domain-containing protein -
  KBU60_RS08115 (KBU60_08115) luxO 1691534..1693078 (+) 1545 WP_025631727.1 sigma-54 dependent transcriptional regulator Regulator
  KBU60_RS08120 (KBU60_08120) - 1693053..1694123 (+) 1071 WP_212569228.1 glycosyltransferase family 4 protein -
  KBU60_RS08125 (KBU60_08125) - 1694274..1695458 (+) 1185 WP_005483478.1 glycosyltransferase -
  KBU60_RS08130 (KBU60_08130) - 1695469..1696641 (+) 1173 WP_069525969.1 glycosyltransferase family 4 protein -
  KBU60_RS08135 (KBU60_08135) - 1696634..1698064 (+) 1431 WP_069525968.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 57462.32 Da        Isoelectric Point: 5.8567

>NTDB_id=486504 KBU60_RS08115 WP_025631727.1 1691534..1693078(+) (luxO) [Vibrio parahaemolyticus strain FB-11]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLEDLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLTEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLTTYAKEDKKKFSNIDTEAQHVIKHYEWPGNVRQLQNIIRNIVVLNNDEKVTVAHLPAQLTQKKTQARTVTPV
HVESSSPSNNLNGHNAPAMQTQPIEPVQPVQEVPAQQTQPTVGVETPSHSLSPYFNADGSIRPMWQVEREAIQNAIAYCD
GNVLNAAVMLELSPSTVYRKKQAWEADEVNLEQS

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=486504 KBU60_RS08115 WP_025631727.1 1691534..1693078(+) (luxO) [Vibrio parahaemolyticus strain FB-11]
ATGAGACCAAGGGTGTTACTGGTAGAAGACTCTACCTCATTAGCCATACTTTATAAGCAATATGTGAAAGATGAGCCTTA
CGACATTTTCCATGTCGAGACAGGTCGTGATGCCATTCAATTCATTGAACGCAGCAAGCCTCAACTGATCATTTTGGATT
TAAAACTTCCAGACATGTCGGGGGAAGACGTGTTGGATTGGATCAATCAAAATGATATTCCCACTTCGGTCATCATCGCC
ACCGCACACGGCAGCGTCGACTTAGCTGTAAACTTGATTCAAAAAGGCGCTGAAGACTTCTTAGAAAAACCCATCAATGC
CGACCGTCTTAAAACCTCTGTGGCACTGCATCTAAAGCGAGCCAAATTGGAAGACTTGGTAGAAAACATTCAGTCTACCT
TCGATCGCCACAACTATCATGGCTTCATTGGTTCAAGCCTACCGATGCAAGCGGTATACAAAACGATAGATGCCGTCGCA
CCAACCTCGGCCAGCGTCTTTATCGTCGGTGAAAGTGGCACGGGTAAAGAAGTGTGCGCCGAAGCCGTTCATCGCCAAAG
TGATCGCAGAGATAAACCTTTCATCGCCATCAACTGTGGTGCGATACCACGAGATTTGATGGAAAGTGAGATTTTCGGTC
ACGTTAAAGGGGCGTTTACTGGCGCAACCACAGACAGAAAAGGCGCAGCAACATTGGCCCACGGTGGGACGCTATTTCTC
GACGAGCTGTGTGAAATGGAACTGGAAATGCAGAAAAAGCTACTGCGCTTCTTACAAACGGGCACTTACACCCCACTTGG
CGGCACGAAAGAGATGAAAGTCGATGTACGTATCATTTGCGCCACCAACCGAGATCCACTTACAGAAGTGGAAGAAGGAC
GCTTCCGCGAAGACTTGTATTACCGTGTTCACGTTGTGCCGATTGATATGCCACCTTTGAGAGAAAGAGGAAGTGACATC
GTCACGTTAGCCAAGCATTTTCTCACGACTTACGCCAAAGAGGACAAGAAGAAATTCTCTAACATTGATACCGAAGCGCA
GCACGTGATCAAACATTACGAATGGCCTGGCAACGTAAGGCAGCTACAAAACATCATTCGTAATATCGTGGTACTCAACA
ATGATGAAAAAGTCACGGTGGCTCACCTACCCGCTCAGTTAACTCAAAAGAAAACGCAGGCAAGAACCGTAACCCCTGTG
CACGTCGAATCATCAAGCCCGAGCAACAATCTCAACGGACATAATGCTCCAGCGATGCAAACACAACCCATTGAACCAGT
GCAACCTGTTCAAGAGGTGCCTGCTCAACAAACACAACCTACTGTCGGCGTTGAAACACCGAGTCATTCCTTATCGCCAT
ACTTTAATGCAGACGGAAGTATCCGACCAATGTGGCAAGTCGAACGTGAAGCGATTCAAAACGCGATCGCTTATTGTGAT
GGTAACGTGCTCAATGCCGCTGTGATGCTGGAGCTAAGCCCTTCAACGGTCTATCGTAAAAAACAAGCGTGGGAAGCGGA
TGAAGTTAATCTCGAACAATCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory protein, Fis family (HTH_8)

(464-500)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.098

97.082

0.477