Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   TL13_RS01950 Genome accession   NC_021213
Coordinates   381813..382601 (+) Length   262 a.a.
NCBI ID   WP_015646462.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 376813..387601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS01925 (TL13_0382) - 377430..378389 (-) 960 WP_004195766.1 asparaginase -
  TL13_RS10850 - 378459..379824 (+) 1366 Protein_339 Cof-type HAD-IIB family hydrolase -
  TL13_RS01940 (TL13_0384) - 379840..380292 (-) 453 WP_004195772.1 universal stress protein -
  TL13_RS01945 (TL13_0385) - 380447..381661 (+) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  TL13_RS01950 (TL13_0386) codY 381813..382601 (+) 789 WP_015646462.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  TL13_RS01955 (TL13_0387) - 382603..383229 (+) 627 WP_015646463.1 cysteine hydrolase family protein -
  TL13_RS01960 (TL13_0388) rplS 383431..383778 (+) 348 WP_011921928.1 50S ribosomal protein L19 -
  TL13_RS01965 (TL13_0389) - 383965..384639 (+) 675 WP_012774968.1 hydrolase -
  TL13_RS01970 (TL13_0390) gatC 384856..385158 (+) 303 WP_011921930.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  TL13_RS01975 (TL13_0391) gatA 385158..386624 (+) 1467 WP_015646464.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29364.39 Da        Isoelectric Point: 4.6190

>NTDB_id=48617 TL13_RS01950 WP_015646462.1 381813..382601(+) (codY) [Streptococcus suis TL13]
MTTLLEKTRNITSILKRSEEQLAEELPYNTIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=48617 TL13_RS01950 WP_015646462.1 381813..382601(+) (codY) [Streptococcus suis TL13]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATACCATTGCTGAGCATTTATCAGCTATTATTGATTGTAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATATCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTCCAAAATAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
ATCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTATCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTTATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496

Multiple sequence alignment